Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 9.4e-268 926.4 506 100.0
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 9.8e-31 139.0 290 34.8
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 9.8e-31 139.0 300 33.3
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 9.8e-31 139.0 300 33.3
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 2.8e-30 137.5 298 32.2
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 3.7e-30 137.1 293 31.1
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 4.8e-30 136.7 290 33.8
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 5.4e-29 133.3 298 31.2
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 5.4e-29 133.3 315 32.4
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 5.4e-29 133.3 320 32.2
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 5.4e-29 133.3 287 32.1
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 7.0e-29 132.9 288 33.7
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 9.1e-29 132.5 303 32.7
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 9.1e-29 132.5 304 31.9
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 1.2e-28 132.1 297 31.6
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 2.0e-28 131.3 295 32.5
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 3.5e-28 130.6 298 30.2
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 3.5e-28 130.6 298 30.2
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 3.5e-28 130.6 309 29.8
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 5.9e-28 129.8 295 32.2
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 1.3e-27 128.6 316 31.3
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 3.8e-27 127.1 294 29.9
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 5.0e-27 126.7 290 30.3
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 6.5e-27 126.3 314 29.6
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 6.5e-27 126.3 296 30.7
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 8.5e-27 125.9 288 31.9
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 8.5e-27 125.9 319 29.8
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 1.1e-26 125.6 295 30.8
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 1.1e-26 125.6 295 31.5
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 1.1e-26 125.6 317 31.9
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 1.5e-26 125.2 301 29.6
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 1.5e-26 125.2 300 31.0
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.9e-26 124.8 296 30.4
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 1.9e-26 124.8 309 30.4
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 1.9e-26 124.8 298 29.5
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 1.9e-26 124.8 331 30.8
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 1.9e-26 124.8 297 30.3
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 2.5e-26 124.4 334 29.9
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 2.5e-26 124.4 292 30.5
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 3.2e-26 124.0 337 28.2
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 5.5e-26 123.2 297 30.3
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 7.2e-26 122.9 313 28.8
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 7.2e-26 122.9 303 29.4
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 9.5e-26 122.5 301 29.6
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 1.2e-25 122.1 298 28.9
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 1.2e-25 122.1 301 29.9
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 1.2e-25 122.1 296 31.1
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 1.2e-25 122.1 299 29.4
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 1.2e-25 122.1 298 28.5
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 1.6e-25 121.7 311 29.6
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 2.1e-25 121.3 290 30.0
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 2.1e-25 121.3 292 29.5
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 2.1e-25 121.3 316 30.1
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 2.8e-25 120.9 334 28.4
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 2.8e-25 120.9 292 29.8
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 3.6e-25 120.6 313 30.0
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 3.6e-25 120.6 319 30.1
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 3.6e-25 120.6 303 29.7
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 4.7e-25 120.2 309 29.8
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 6.1e-25 119.8 294 30.3
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 1.0e-24 119.0 322 28.6
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 1.0e-24 119.0 315 28.9
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 1.4e-24 118.6 328 28.7
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.4e-24 118.6 308 29.9
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.4e-24 118.6 308 29.9
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 1.8e-24 118.2 301 28.2
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 1.8e-24 118.2 314 31.8
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.8e-24 118.2 309 29.4
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 2.3e-24 117.9 319 28.5
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 2.3e-24 117.9 289 30.8
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 2.3e-24 117.9 323 29.1
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 2.3e-24 117.9 291 29.2
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 3.0e-24 117.5 318 28.9
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 3.0e-24 117.5 318 28.9
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 3.0e-24 117.5 295 31.9
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.0e-24 117.5 296 30.7
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.0e-24 117.5 324 29.6
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 4.0e-24 117.1 314 30.6
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 4.0e-24 117.1 339 28.9
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 5.2e-24 116.7 319 29.5
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 6.8e-24 116.3 312 29.8
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 8.8e-24 115.9 328 28.4
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 1.2e-23 115.5 287 28.9
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 1.2e-23 115.5 289 28.0
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.2e-23 115.5 303 30.0
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 1.2e-23 115.5 295 30.5
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.2e-23 115.5 297 30.3
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 1.5e-23 115.2 301 29.6
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 1.5e-23 115.2 287 28.9
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.5e-23 115.2 314 30.3
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 2.0e-23 114.8 297 27.9
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.0e-23 114.8 308 30.2
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 2.6e-23 114.4 289 28.4
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.6e-23 114.4 318 28.6
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 2.6e-23 114.4 317 28.1
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 3.4e-23 114.0 284 27.5
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 3.4e-23 114.0 307 29.6
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 4.4e-23 113.6 321 28.3
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 5.7e-23 113.2 299 29.1
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 5.7e-23 113.2 315 28.3
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 5.7e-23 113.2 310 28.1
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 7.5e-23 112.8 322 28.9
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 7.5e-23 112.8 307 27.7
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 9.8e-23 112.5 315 28.9
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 9.8e-23 112.5 297 31.0
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 9.8e-23 112.5 309 29.4
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 1.3e-22 112.1 298 28.9
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.3e-22 112.1 335 27.2
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 1.3e-22 112.1 291 28.2
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 1.7e-22 111.7 303 27.7
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 1.7e-22 111.7 311 28.6
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 1.7e-22 111.7 332 29.5
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 3.7e-22 110.5 307 28.0
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 3.7e-22 110.5 296 30.1
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 4.9e-22 110.2 313 28.1
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 4.9e-22 110.2 292 27.1
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 4.9e-22 110.2 316 28.2
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 6.3e-22 109.8 285 29.5
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 6.3e-22 109.8 312 25.0
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 8.3e-22 109.4 328 28.0
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 1.1e-21 109.0 305 27.2
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.1e-21 109.0 296 26.7
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.4e-21 108.6 310 27.7
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.4e-21 108.6 335 26.9
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.4e-21 107.8 289 28.0
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 3.1e-21 107.5 305 28.5
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 3.1e-21 107.5 320 28.1
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 4.1e-21 107.1 292 28.1
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 4.1e-21 107.1 287 26.5
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 4.1e-21 107.1 292 28.1
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 7.0e-21 106.3 321 26.5
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 9.2e-21 105.9 286 25.5
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 9.2e-21 105.9 297 28.6
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 9.2e-21 105.9 321 27.1
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 9.2e-21 105.9 363 27.3
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 1.2e-20 105.5 324 25.9
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 2.7e-20 104.4 327 27.5
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 7.8e-20 102.8 287 27.2
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.3e-19 101.3 306 28.4
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 2.3e-19 101.3 294 26.5
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 2.9e-19 100.9 296 28.7
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 3.8e-19 100.5 330 26.4
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 8.6e-19 99.4 288 26.0
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 1.9e-18 98.2 286 24.8
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.8e-17 94.4 293 25.9
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 6.1e-17 93.2 287 30.0
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 3.0e-16 90.9 291 25.4
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 3.0e-16 90.9 291 25.4
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 5.2e-16 90.1 272 28.7
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 3.4e-15 87.4 287 25.4
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 5.7e-15 86.7 261 27.6
Cfa024431 Carpinus fangiana HOM05D003678 ORTHO05D124744 3.7e-14 84.0 113 39.8
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 7.0e-13 79.7 313 24.0
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 1.6e-12 78.6 324 25.9
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 1.6e-12 78.6 347 24.2
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 7.8e-12 76.3 307 28.0
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 5.0e-11 73.6 151 28.5
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.9e-10 71.6 304 24.7
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 7.3e-10 69.7 302 24.5
MCO10G355 Micromonas commoda HOM05D003678 ORTHO05D004340 7.3e-10 69.7 113 35.4
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 5.8e-07 60.1 282 25.2
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 1.7e-06 58.5 87 40.2
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.2e-06 58.2 198 27.8
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 6.4e-06 56.6 40 52.5
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 8.3e-06 56.2 87 37.9
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 8.3e-06 56.2 87 37.9


User provided reference genes

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