Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 2.3e-128 462.2 230 100.0
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.4e-16 90.9 74 54.1
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.4e-16 90.9 74 52.7
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.4e-16 90.1 74 52.7
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 3.1e-16 89.7 64 56.2
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.1e-16 89.7 64 56.2
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.1e-16 89.7 83 47.0
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 3.1e-16 89.7 64 53.1
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 3.1e-16 89.7 64 56.2
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 3.1e-16 89.7 80 50.0
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 4.0e-16 89.4 64 54.7
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.0e-16 89.4 64 54.7
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 4.0e-16 89.4 64 56.2
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 4.0e-16 89.4 64 54.7
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 4.0e-16 89.4 74 52.7
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 4.0e-16 89.4 64 56.2
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 4.0e-16 89.4 74 52.7
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 5.3e-16 89.0 74 51.4
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 5.3e-16 89.0 64 54.7
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 5.3e-16 89.0 64 56.2
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 5.3e-16 89.0 64 56.2
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 5.3e-16 89.0 74 51.4
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 5.3e-16 89.0 74 51.4
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 54.7
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 56.2
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 56.2
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 56.2
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 54.7
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 56.2
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 56.2
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 6.9e-16 88.6 74 51.4
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 54.7
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 56.2
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 6.9e-16 88.6 64 54.7
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 9.0e-16 88.2 74 50.0
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 9.0e-16 88.2 64 54.7
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 9.0e-16 88.2 64 56.2
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 9.0e-16 88.2 64 54.7
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 9.0e-16 88.2 64 56.2
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 9.0e-16 88.2 74 50.0
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 9.0e-16 88.2 64 54.7
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 9.0e-16 88.2 64 53.1
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 1.2e-15 87.8 64 54.7
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.2e-15 87.8 74 51.4
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.2e-15 87.8 64 54.7
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.2e-15 87.8 64 54.7
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.2e-15 87.8 74 50.0
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.2e-15 87.8 74 48.6
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.2e-15 87.8 64 54.7
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.2e-15 87.8 74 48.6
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.2e-15 87.8 74 48.6
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.2e-15 87.8 74 48.6
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.2e-15 87.8 74 48.6
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 1.2e-15 87.8 64 54.7
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 1.5e-15 87.4 74 50.0
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.5e-15 87.4 74 50.0
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.5e-15 87.4 74 48.6
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.5e-15 87.4 64 54.7
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.5e-15 87.4 64 53.1
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.0e-15 87.0 74 50.0
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.0e-15 87.0 64 54.7
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 2.0e-15 87.0 74 50.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 2.0e-15 87.0 64 54.7
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 2.0e-15 87.0 64 54.7
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 2.6e-15 86.7 64 54.7
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 2.6e-15 86.7 64 54.7
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 2.6e-15 86.7 64 54.7
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 2.6e-15 86.7 64 54.7
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 2.6e-15 86.7 64 54.7
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 3.4e-15 86.3 74 50.0
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 3.4e-15 86.3 64 51.6
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 54.7
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 53.1
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 54.7
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 53.1
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 4.5e-15 85.9 103 40.8
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 4.5e-15 85.9 103 40.8
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 53.1
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 53.1
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 53.1
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 54.7
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 53.1
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 53.1
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 4.5e-15 85.9 64 53.1
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 5.8e-15 85.5 64 53.1
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 5.8e-15 85.5 105 41.9
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 7.6e-15 85.1 74 50.0
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 7.6e-15 85.1 64 51.6
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 7.6e-15 85.1 64 53.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 7.6e-15 85.1 64 53.1
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 7.6e-15 85.1 64 53.1
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 9.9e-15 84.7 64 51.6
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 9.9e-15 84.7 64 53.1
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 9.9e-15 84.7 64 51.6
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 9.9e-15 84.7 64 50.0
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.2e-14 83.6 64 53.1
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.9e-14 83.2 78 46.2
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.9e-14 83.2 64 51.6
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 4.9e-14 82.4 64 54.7
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 4.9e-14 82.4 64 54.7
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 4.9e-14 82.4 64 54.7
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 4.9e-14 82.4 67 50.7
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.9e-14 82.4 107 40.2
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-13 81.3 64 53.1
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.1e-13 81.3 64 53.1
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.9e-13 80.5 75 45.3
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 3.2e-13 79.7 64 48.4
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.2e-12 77.8 65 49.2
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.7e-12 76.6 93 38.7
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.6e-12 75.9 64 45.3
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 6.0e-12 75.5 67 47.8
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 7.9e-12 75.1 54 53.7
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 7.9e-12 75.1 58 51.7
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 7.9e-12 75.1 58 51.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.8e-11 73.9 57 52.6
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.8e-11 73.9 111 34.2
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 2.3e-11 73.6 58 50.0
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 3.0e-11 73.2 74 45.9
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 3.0e-11 73.2 58 51.7
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.9e-11 72.8 64 45.3
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 5.1e-11 72.4 58 50.0
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 5.1e-11 72.4 58 50.0
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.7e-11 72.0 65 44.6
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.7e-11 72.0 65 44.6
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.5e-10 70.9 58 50.0
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 4.3e-10 69.3 74 40.5
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.3e-09 67.8 74 40.5
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.3e-09 67.8 80 40.0
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.6e-09 67.4 74 41.9
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.6e-09 67.4 64 42.2
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.8e-09 66.6 74 39.2
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 8.1e-09 65.1 74 39.2
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.1e-08 64.7 74 39.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-08 64.3 48 52.1
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 3.4e-07 59.7 74 36.5
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 2.9e-06 56.6 61 34.4
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.9e-06 55.8 83 33.7
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 6.4e-06 55.5 69 37.7


User provided reference genes

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