Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 3.0e-134 481.9 245 100.0
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.5e-29 134.0 242 40.9
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.4e-29 132.5 243 36.2
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.3e-28 131.0 241 36.5
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.7e-28 130.6 239 35.6
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 8.3e-28 128.3 223 38.1
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.1e-27 127.9 219 37.4
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.9e-27 127.1 219 37.4
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.9e-27 127.1 223 37.2
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 2.4e-27 126.7 223 37.2
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 3.2e-27 126.3 242 35.1
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 5.4e-27 125.6 220 38.6
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 5.4e-27 125.6 223 36.3
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 5.4e-27 125.6 219 36.5
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.4e-27 125.6 241 35.7
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 7.1e-27 125.2 206 40.3
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 9.2e-27 124.8 235 37.0
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 9.2e-27 124.8 241 35.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.2e-26 124.4 239 36.0
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-26 124.4 237 36.3
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.2e-26 124.4 239 36.0
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 2.7e-26 123.2 238 35.3
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 2.7e-26 123.2 235 36.6
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.5e-26 122.9 223 35.9
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.5e-26 122.9 239 35.1
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 3.5e-26 122.9 223 36.8
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 4.6e-26 122.5 233 36.5
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.6e-26 122.5 241 34.9
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 4.6e-26 122.5 241 35.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.6e-26 122.5 239 35.1
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 7.8e-26 121.7 219 36.5
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 7.8e-26 121.7 235 35.3
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.0e-25 121.3 239 36.0
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.0e-25 121.3 223 35.4
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-25 120.9 239 35.1
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-25 120.9 239 35.1
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.3e-25 120.9 219 35.2
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.7e-25 120.6 223 35.4
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.3e-25 120.2 223 35.4
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 3.0e-25 119.8 240 36.2
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.0e-25 119.8 235 35.7
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 3.9e-25 119.4 239 34.3
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.9e-25 119.4 219 36.5
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 3.9e-25 119.4 235 36.2
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.1e-25 119.0 238 34.5
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 6.6e-25 118.6 233 35.6
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 6.6e-25 118.6 219 36.5
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 6.6e-25 118.6 243 34.6
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 6.6e-25 118.6 219 35.6
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 6.6e-25 118.6 219 35.6
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 8.6e-25 118.2 239 33.5
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 8.6e-25 118.2 219 36.5
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 1.1e-24 117.9 219 35.6
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.1e-24 117.9 237 35.0
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.9e-24 117.1 219 35.2
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.5e-24 116.7 239 34.3
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.5e-24 116.7 222 34.2
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 2.5e-24 116.7 239 33.1
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.3e-24 116.3 238 33.6
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 4.3e-24 115.9 233 35.6
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.3e-24 115.9 238 34.0
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 5.6e-24 115.5 234 33.3
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 5.6e-24 115.5 239 33.5
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 5.6e-24 115.5 223 34.5
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 5.6e-24 115.5 219 35.6
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 9.5e-24 114.8 237 34.2
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 9.5e-24 114.8 238 34.0
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.2e-23 114.4 237 33.8
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.2e-23 114.4 220 34.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.2e-23 114.4 220 34.5
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.6e-23 114.0 235 34.9
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.1e-23 113.6 241 34.0
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.8e-23 113.2 238 33.6
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.8e-23 113.2 233 35.2
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.6e-23 112.8 239 33.9
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 3.6e-23 112.8 223 33.6
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 4.7e-23 112.5 239 33.9
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 4.7e-23 112.5 239 33.9
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 4.7e-23 112.5 239 33.9
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 4.7e-23 112.5 221 33.9
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.1e-22 111.3 186 36.0
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.1e-22 111.3 239 33.5
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.1e-22 111.3 237 34.2
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.4e-22 110.9 239 33.5
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.4e-22 110.9 221 33.0
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.4e-22 110.9 236 32.2
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.4e-22 110.9 220 34.1
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 2.4e-22 110.2 239 33.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.4e-22 110.2 219 32.4
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 4.0e-22 109.4 237 32.9
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 4.0e-22 109.4 235 33.2
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 5.2e-22 109.0 273 30.8
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 6.8e-22 108.6 216 33.8
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 8.9e-22 108.2 238 32.8
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 8.9e-22 108.2 204 35.8
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.2e-21 107.8 240 33.3
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.2e-21 107.8 203 34.5
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 3.4e-21 106.3 236 33.5
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.4e-21 105.9 235 34.9
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 5.8e-21 105.5 200 36.5
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.3e-20 104.4 211 35.1
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.8e-20 102.8 235 31.9
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 3.8e-20 102.8 174 36.2
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.9e-20 102.4 235 32.3
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 4.9e-20 102.4 219 33.3
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.1e-19 101.3 205 34.6
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.4e-19 100.9 264 30.3
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.9e-19 100.5 173 35.3
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.4e-19 100.1 260 30.0
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.6e-18 97.4 239 30.5
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.8e-18 95.1 145 39.3
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.8e-18 95.1 145 39.3
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.3e-17 93.6 127 39.4
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 3.9e-17 92.8 239 31.0
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 5.1e-17 92.4 224 30.8
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.1e-16 91.3 293 28.3
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.9e-16 90.5 239 31.8
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.1e-15 87.0 162 35.8
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.1e-14 84.7 166 33.1
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.1e-14 83.2 129 39.5
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 5.2e-14 82.4 126 38.9
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 6.9e-14 82.0 146 36.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.6e-13 78.6 160 33.8
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.3e-12 77.8 102 42.2
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 3.8e-12 76.3 122 37.7
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 4.9e-12 75.9 118 38.1
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 5.4e-11 72.4 155 35.5
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.3e-09 67.0 166 30.1
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 5.1e-09 65.9 236 28.8
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 5.1e-09 65.9 173 28.9
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.6e-07 60.8 100 37.0
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.3e-06 55.8 107 37.4


User provided reference genes

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