Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 0.0e+00 1679.1 903 100.0
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 9.2e-56 223.0 252 47.2
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.7e-55 221.5 253 45.8
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 5.9e-55 220.3 256 46.1
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 5.9e-55 220.3 254 46.5
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.0e-54 219.5 254 46.5
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.7e-54 218.8 356 37.4
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.7e-54 218.8 257 47.9
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 2.3e-54 218.4 257 47.5
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 5.0e-54 217.2 252 46.0
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 6.6e-54 216.9 253 47.0
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 6.6e-54 216.9 257 43.2
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 2.5e-53 214.9 263 43.0
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 3.3e-53 214.5 256 45.7
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.3e-53 214.2 253 45.1
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 4.3e-53 214.2 253 46.2
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 4.3e-53 214.2 245 48.2
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 5.6e-53 213.8 256 45.3
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.3e-53 213.4 254 46.1
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 9.5e-53 213.0 252 45.6
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-52 212.6 255 45.1
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.2e-52 212.6 256 46.9
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.6e-52 212.2 258 46.5
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.6e-52 212.2 252 46.4
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-52 211.8 245 46.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 2.1e-52 211.8 246 48.0
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 2.8e-52 211.5 255 46.7
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.8e-52 211.5 255 45.9
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 3.6e-52 211.1 245 47.3
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 3.6e-52 211.1 258 45.3
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 3.6e-52 211.1 253 45.1
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.6e-52 211.1 340 40.3
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 4.7e-52 210.7 245 46.9
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 4.7e-52 210.7 245 46.9
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 4.7e-52 210.7 245 46.9
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 4.7e-52 210.7 245 46.9
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 4.7e-52 210.7 254 44.9
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 6.2e-52 210.3 254 46.5
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 6.2e-52 210.3 246 47.6
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 6.2e-52 210.3 253 45.1
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 6.2e-52 210.3 254 45.7
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 8.0e-52 209.9 245 46.9
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.0e-51 209.5 254 44.9
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.0e-51 209.5 254 44.9
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 1.0e-51 209.5 253 44.3
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.0e-51 209.5 254 45.3
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.4e-51 209.1 254 44.9
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.4e-51 209.1 254 46.1
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.4e-51 209.1 254 44.9
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.8e-51 208.8 246 47.2
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.8e-51 208.8 254 44.9
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 1.8e-51 208.8 254 45.7
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.8e-51 208.8 267 44.2
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.3e-51 208.4 254 46.1
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 2.3e-51 208.4 254 43.7
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 2.3e-51 208.4 254 43.7
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 2.3e-51 208.4 254 45.3
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 3.1e-51 208.0 245 46.9
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 3.1e-51 208.0 254 45.7
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 3.1e-51 208.0 263 46.0
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 3.1e-51 208.0 248 46.4
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 4.0e-51 207.6 254 44.5
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 4.0e-51 207.6 254 45.3
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 5.2e-51 207.2 254 45.3
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 5.2e-51 207.2 256 44.5
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 5.2e-51 207.2 257 44.4
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 6.8e-51 206.8 257 44.7
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 6.8e-51 206.8 254 44.5
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 8.9e-51 206.5 245 47.3
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 8.9e-51 206.5 254 44.5
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.2e-50 206.1 246 45.1
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.2e-50 206.1 246 45.1
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 1.2e-50 206.1 246 45.1
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.2e-50 206.1 231 48.1
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.2e-50 206.1 252 44.4
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 1.5e-50 205.7 248 44.8
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.5e-50 205.7 244 45.5
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.0e-50 205.3 245 44.9
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.6e-50 204.9 244 46.3
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 2.6e-50 204.9 246 47.6
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 2.6e-50 204.9 255 45.1
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 2.6e-50 204.9 253 45.1
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.6e-50 204.9 260 41.2
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 3.4e-50 204.5 245 45.7
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.4e-50 204.5 268 39.6
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 3.4e-50 204.5 249 44.2
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 5.8e-50 203.8 248 44.8
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 5.8e-50 203.8 245 44.9
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 5.8e-50 203.8 254 44.9
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 7.5e-50 203.4 254 44.5
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 9.8e-50 203.0 254 43.7
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 9.8e-50 203.0 255 41.2
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 9.8e-50 203.0 254 45.3
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 9.8e-50 203.0 246 45.9
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.3e-49 202.6 245 45.3
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.3e-49 202.6 256 44.1
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 1.3e-49 202.6 254 43.7
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.2e-49 201.8 245 45.3
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 2.9e-49 201.4 245 45.7
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.7e-49 201.1 245 44.9
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.7e-49 201.1 245 44.9
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 3.7e-49 201.1 254 43.3
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 3.7e-49 201.1 247 43.7
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 3.7e-49 201.1 243 45.3
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 3.7e-49 201.1 254 43.3
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 4.9e-49 200.7 245 46.1
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 6.4e-49 200.3 256 44.1
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 8.3e-49 199.9 256 44.5
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.1e-48 199.5 247 43.7
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.1e-48 199.5 253 44.3
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-48 199.1 246 45.9
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 2.4e-48 198.4 245 45.7
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.2e-48 198.0 264 43.6
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 3.2e-48 198.0 249 42.6
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.1e-48 197.6 282 41.5
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.0e-47 195.3 253 42.3
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 6.0e-47 193.7 244 44.7
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 7.8e-47 193.4 236 44.9
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.3e-46 192.6 286 41.3
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.0e-46 191.4 253 42.7
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 3.9e-46 191.0 252 43.3
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 6.6e-46 190.3 246 44.3
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.5e-45 188.3 246 45.5
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 4.3e-45 187.6 252 42.9
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 5.6e-45 187.2 248 42.7
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 9.5e-45 186.4 252 42.5
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 1.2e-44 186.0 248 42.7
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.6e-44 185.7 261 42.1
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 4.7e-44 184.1 202 47.5
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 8.1e-44 183.3 201 46.8
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 8.1e-44 183.3 245 42.0
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 8.1e-44 183.3 245 42.0
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-43 183.0 245 42.0
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.8e-43 182.2 236 43.6
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 5.2e-43 180.6 297 38.4
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 6.8e-43 180.3 248 41.9
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 6.8e-43 180.3 248 41.9
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 6.8e-43 180.3 248 41.9
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 6.8e-43 180.3 253 41.9
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 5.8e-42 177.2 191 47.6
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 5.8e-42 177.2 247 40.1
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 1.3e-41 176.0 227 44.5
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-41 175.3 245 41.6
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 1.9e-40 172.2 246 41.9
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 7.8e-39 166.8 202 45.5
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 3.9e-38 164.5 245 40.0
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 3.3e-37 161.4 218 43.1
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 2.3e-35 155.2 261 34.5
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.3e-35 155.2 179 44.1
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 1.5e-34 152.5 240 37.1
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 2.0e-34 152.1 178 46.6
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.6e-34 150.2 253 37.2
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.6e-31 142.5 134 55.2
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 7.8e-31 140.2 256 35.2
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 6.6e-30 137.1 134 54.5
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.3e-29 134.8 138 47.8
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 1.2e-28 132.9 290 31.7
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 6.2e-28 130.6 271 32.8
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 8.9e-27 126.7 246 32.5
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.6e-26 125.2 145 48.3
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.3e-25 122.9 255 34.5
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 2.9e-25 121.7 148 43.2
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 8.4e-25 120.2 156 43.6
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-24 119.0 146 42.5
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 9.3e-24 116.7 144 45.1
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 3.3e-21 108.2 207 34.3
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.1e-19 101.7 266 30.8
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 4.4e-18 97.8 253 28.9
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 2.4e-16 92.0 263 28.9
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 3.2e-16 91.7 112 45.5
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.4e-16 90.9 141 41.1
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.2e-15 89.7 89 53.9
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 5.1e-14 84.3 79 57.0
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.7e-14 83.6 134 37.3
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.6e-12 78.2 128 35.9
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 6.2e-12 77.4 101 39.6
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 1.1e-11 76.6 121 35.5
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 1.2e-10 73.2 112 38.4
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.6e-07 62.8 100 39.0
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-06 60.1 85 40.0


User provided reference genes

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