Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 0.0e+00 1454.9 756 100.0
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 9.3e-78 295.8 691 30.8
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 1.0e-76 292.4 740 30.5
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.5e-75 288.5 741 30.8
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.5e-75 287.7 725 30.8
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 4.3e-75 287.0 723 30.8
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 5.7e-75 286.6 725 30.8
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 5.7e-75 286.6 724 30.7
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 7.4e-75 286.2 730 30.7
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 9.6e-75 285.8 730 30.5
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 1.3e-74 285.4 725 30.3
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 1.6e-74 285.0 662 31.4
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 2.8e-74 284.3 742 30.3
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 3.7e-74 283.9 737 30.5
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 3.7e-74 283.9 728 30.6
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 4.8e-74 283.5 727 30.3
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 4.8e-74 283.5 720 30.1
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 6.3e-74 283.1 670 30.7
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 6.3e-74 283.1 743 30.4
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 8.2e-74 282.7 730 30.1
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 1.1e-73 282.3 738 30.4
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.8e-73 281.6 726 29.9
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.8e-73 281.6 739 29.9
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.4e-73 281.2 768 29.7
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 2.4e-73 281.2 723 30.3
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 4.1e-73 280.4 742 30.1
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 5.3e-73 280.0 729 30.5
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 1.2e-72 278.9 738 29.9
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.2e-72 278.9 730 29.7
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 1.2e-72 278.9 686 30.5
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 1.5e-72 278.5 671 30.8
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 2.0e-72 278.1 742 30.2
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 2.0e-72 278.1 726 29.9
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 2.0e-72 278.1 741 30.1
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 2.6e-72 277.7 725 29.8
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.6e-72 277.7 735 29.8
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 2.6e-72 277.7 730 29.9
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 3.4e-72 277.3 719 30.7
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 4.5e-72 276.9 667 31.8
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 4.5e-72 276.9 725 29.9
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 4.5e-72 276.9 726 29.8
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 5.9e-72 276.6 726 29.2
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 7.6e-72 276.2 726 29.2
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 1.0e-71 275.8 748 29.5
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 1.0e-71 275.8 726 29.1
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 1.0e-71 275.8 726 29.1
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 1.0e-71 275.8 726 29.1
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 1.0e-71 275.8 660 30.3
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 1.0e-71 275.8 730 29.3
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 1.0e-71 275.8 729 29.6
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 1.3e-71 275.4 730 29.2
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 1.3e-71 275.4 726 29.1
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 1.3e-71 275.4 724 29.8
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 1.3e-71 275.4 730 29.2
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 1.7e-71 275.0 730 29.3
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 2.9e-71 274.2 730 29.5
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 2.9e-71 274.2 730 29.5
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 3.8e-71 273.9 735 30.1
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.8e-71 273.9 680 30.4
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 3.8e-71 273.9 721 30.2
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 3.8e-71 273.9 730 29.7
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 3.8e-71 273.9 730 29.3
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 5.0e-71 273.5 725 29.2
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 6.5e-71 273.1 730 29.0
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 6.5e-71 273.1 741 29.3
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.1e-70 272.3 730 29.2
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 1.1e-70 272.3 730 29.2
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 1.1e-70 272.3 730 28.9
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.4e-70 271.9 726 29.2
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 1.9e-70 271.6 730 30.1
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 1.9e-70 271.6 730 29.5
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 1.9e-70 271.6 738 29.5
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 2.5e-70 271.2 730 29.2
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 2.5e-70 271.2 730 29.7
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 4.2e-70 270.4 724 29.4
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 1.2e-69 268.9 729 29.2
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 1.2e-69 268.9 729 29.2
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 1.6e-69 268.5 729 29.5
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.1e-69 268.1 729 29.2
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 2.7e-69 267.7 729 29.9
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 4.6e-69 266.9 728 29.1
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 7.9e-69 266.2 729 29.2
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 1.3e-68 265.4 656 29.7
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 1.8e-68 265.0 733 28.2
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.8e-68 265.0 649 31.1
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 2.3e-68 264.6 734 30.1
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 5.1e-68 263.5 678 30.4
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 1.9e-67 261.5 745 28.6
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 5.7e-67 260.0 725 29.5
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 7.4e-67 259.6 814 27.3
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 4.8e-66 256.9 732 29.1
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 4.8e-66 256.9 732 29.1
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 6.3e-66 256.5 736 28.3
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 8.2e-66 256.1 740 28.6
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 8.2e-66 256.1 716 29.6
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 1.8e-65 255.0 708 29.8
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 1.8e-65 255.0 716 29.5
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.8e-65 255.0 773 28.7
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 5.3e-65 253.4 697 29.8
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.8e-63 247.3 728 29.7
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 5.0e-63 246.9 721 29.4
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 5.0e-63 246.9 721 29.4
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 1.1e-62 245.7 719 29.5
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 1.9e-62 245.0 815 26.5
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 3.2e-62 244.2 594 31.1
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 9.4e-62 242.7 733 28.2
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 3.6e-61 240.7 712 28.8
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 6.7e-60 236.5 617 29.3
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 6.7e-60 236.5 759 27.4
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 2.5e-59 234.6 681 27.8
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 3.3e-59 234.2 678 29.4
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 1.4e-57 228.8 783 27.8
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 4.1e-57 227.3 526 31.7
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 6.5e-55 219.9 689 28.4
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 4.2e-54 217.2 656 28.5
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 4.2e-54 217.2 752 25.8
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 9.4e-54 216.1 618 29.3
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 2.7e-53 214.5 791 25.9
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 4.4e-51 207.2 732 25.7
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 5.7e-51 206.8 709 27.5
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 5.7e-51 206.8 732 25.7
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.7e-50 205.3 648 28.7
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.8e-49 201.8 496 30.6
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 9.1e-49 199.5 706 26.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 5.9e-48 196.8 592 29.7
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.7e-47 195.3 551 28.9
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 5.2e-44 183.7 356 34.3
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 2.6e-43 181.4 440 30.2
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 3.3e-43 181.0 644 27.0
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 2.8e-42 177.9 384 31.0
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.8e-42 177.9 356 34.0
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 5.5e-38 163.7 545 25.7
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 3.6e-37 161.0 661 25.0
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 4.7e-37 160.6 394 31.0
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 4.0e-36 157.5 693 24.5
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 7.7e-32 143.3 816 23.2
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 6.8e-28 130.2 355 29.0
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 3.4e-27 127.9 249 35.7
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 8.3e-26 123.2 372 26.9
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 1.0e-23 116.3 315 29.5
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 6.6e-23 113.6 298 31.2
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 8.6e-23 113.2 230 32.6
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 2.6e-19 101.7 284 29.9
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 3.2e-09 68.2 122 36.9
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.6e-08 65.9 88 40.9
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 1.5e-06 59.3 172 29.1
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 1.5e-06 59.3 94 39.4


User provided reference genes

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