Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1676.8 822 100.0
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1532.3 832 91.6
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1453.0 811 87.5
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1427.2 811 85.3
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1427.2 815 84.8
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1426.0 815 85.3
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1417.1 815 83.9
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1417.1 816 84.2
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1414.1 811 84.7
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1412.5 812 84.4
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1412.5 811 84.6
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1411.7 815 84.7
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1410.2 822 83.6
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1410.2 815 83.8
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1410.2 815 83.9
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1400.6 815 82.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1399.4 819 83.2
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1398.6 815 82.7
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1395.6 815 84.2
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1394.8 815 84.2
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1394.4 815 84.3
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1391.3 820 82.9
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1389.4 811 83.4
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1389.0 819 82.7
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1388.2 810 82.7
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1386.7 813 82.5
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1384.8 811 82.6
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1384.4 809 82.2
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1384.0 814 81.4
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1384.0 822 82.5
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1382.9 814 82.4
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1382.5 814 82.4
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1381.3 815 83.6
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1375.5 815 83.2
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1373.6 812 82.0
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1372.8 815 81.3
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1367.8 811 81.4
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1367.4 812 81.5
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1367.1 815 81.8
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1367.1 815 81.1
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1366.7 811 81.5
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 815 80.7
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1362.1 813 80.9
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1356.3 811 81.4
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1348.6 813 80.6
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1345.5 811 81.0
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1340.9 892 74.4
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1334.3 815 80.1
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1329.7 811 80.4
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1323.1 815 78.3
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1321.2 815 78.4
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1320.4 823 77.9
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1313.5 812 79.3
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1310.8 815 77.4
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1307.7 811 78.1
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1303.9 811 77.4
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1300.8 811 77.1
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1299.6 811 77.4
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1297.3 811 76.7
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1295.0 812 76.5
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1294.6 812 77.2
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1293.9 811 76.3
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1292.3 811 76.4
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1292.3 801 77.8
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1291.9 812 76.6
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1289.6 811 76.1
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 812 76.1
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1283.9 811 75.8
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1283.9 811 75.8
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 811 77.2
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1280.8 812 75.9
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 812 76.7
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1278.5 811 76.1
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1278.1 787 78.8
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 968 69.5
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1276.5 811 76.7
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 810 75.8
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 813 76.0
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1272.7 811 76.4
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1267.7 811 75.7
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 811 76.0
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1263.4 810 76.2
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 823 75.0
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1261.5 809 76.0
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 813 75.5
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 814 76.2
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1253.4 804 75.6
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 866 71.5
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1241.9 815 75.6
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1241.5 818 73.7
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1239.9 811 74.1
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1239.6 871 71.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1236.5 813 74.7
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1231.9 860 70.5
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1225.3 814 76.3
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1209.5 811 72.0
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 811 74.4
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 813 73.3
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 810 71.2
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1197.6 810 72.6
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1197.6 917 67.1
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 769 76.5
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1190.3 828 71.7
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1185.2 814 70.8
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1184.5 813 70.0
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1171.8 968 64.0
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1159.8 789 72.8
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1147.5 811 70.4
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1112.8 815 70.8
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1098.2 813 68.3
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1095.9 813 64.7
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1090.1 821 64.8
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 8.0e-301 1036.9 605 83.1
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 8.1e-293 1010.4 805 60.5
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 4.6e-280 968.0 817 61.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.6e-254 881.3 783 60.7
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.2e-192 677.6 381 84.3
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 8.3e-189 664.8 857 43.5
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 4.4e-166 589.3 836 40.4
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 8.1e-160 568.5 813 43.3
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 6.7e-146 522.3 946 33.5
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 3.3e-145 520.0 850 37.8
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 8.8e-122 442.2 417 54.9
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.3e-117 428.3 320 65.0
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 3.8e-117 426.8 344 67.2
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.1e-113 415.2 248 78.2
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.8e-88 330.9 242 71.9
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.2e-73 282.3 193 72.5
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.3e-69 268.9 188 73.4
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 2.2e-64 251.5 310 47.4
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.8e-50 205.3 142 76.1
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 2.7e-46 191.4 196 59.2
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 2.9e-40 171.4 100 80.0
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 4.2e-39 167.5 90 84.4
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.3e-37 162.5 133 57.1
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.7e-37 162.2 269 41.6
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 9.6e-36 156.4 113 67.3
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.8e-35 154.1 98 79.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 4.9e-32 144.1 123 66.7
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 6.0e-30 137.1 181 45.9
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.8e-27 127.5 190 42.6
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.1e-26 126.3 80 78.8
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 9.0e-26 123.2 113 50.4
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.5e-25 122.5 178 42.7
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.7e-24 119.0 117 53.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.1e-22 112.1 265 30.6
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 2.1e-22 112.1 115 53.9
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 6.0e-22 110.5 69 78.3
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.1e-18 99.8 57 82.5
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 9.0e-18 96.7 68 69.1
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 7.6e-17 93.6 50 84.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 7.6e-17 93.6 73 64.4
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 2.9e-16 91.7 166 42.2
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 9.3e-15 86.7 43 83.7
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 5.1e-13 80.9 57 75.4
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 5.7e-12 77.4 59 55.9
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.4e-10 72.0 129 36.4
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.0e-09 68.9 57 66.7
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.4e-09 68.2 57 66.7
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.4e-09 68.2 57 66.7
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 3.4e-09 68.2 75 56.0
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 7.7e-09 67.0 57 66.7
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.0e-08 66.6 54 68.5
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-08 65.1 54 66.7
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-08 65.1 54 66.7
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-08 65.1 54 66.7
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-08 65.1 54 66.7
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.9e-07 62.4 34 91.2
Peaxi162Scf00088g01025 Petunia axillaris HOM05D000344 ORTHO05D003478 2.7e-06 58.5 343 23.0
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 3.6e-06 58.2 310 23.9
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 7.9e-06 57.0 43 65.1


User provided reference genes

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