Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 0.0e+00 1832.4 1021 100.0
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 0.0e+00 1581.2 1026 86.7
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 0.0e+00 1424.5 966 77.7
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 0.0e+00 1385.9 938 78.1
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 0.0e+00 1231.5 933 69.6
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 0.0e+00 1201.8 891 70.7
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 0.0e+00 1195.6 1019 65.2
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 0.0e+00 1195.3 935 68.2
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 0.0e+00 1181.0 934 67.6
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 0.0e+00 1180.2 974 67.4
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 0.0e+00 1174.5 937 67.3
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 0.0e+00 1169.1 938 68.0
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 0.0e+00 1157.5 937 68.3
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 0.0e+00 1152.5 926 66.5
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 0.0e+00 1152.5 984 65.1
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 0.0e+00 1152.1 990 63.6
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 0.0e+00 1152.1 941 66.8
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 0.0e+00 1151.3 923 65.4
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 0.0e+00 1150.2 939 65.2
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 0.0e+00 1146.0 976 64.8
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 0.0e+00 1138.6 919 65.6
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 0.0e+00 1136.7 925 66.1
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 0.0e+00 1134.0 938 65.2
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 0.0e+00 1122.1 996 63.8
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 0.0e+00 1120.1 990 63.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 0.0e+00 1114.8 964 62.6
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 0.0e+00 1110.1 953 65.0
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 0.0e+00 1107.8 851 68.4
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 0.0e+00 1107.4 948 65.0
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 0.0e+00 1107.0 948 64.9
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 0.0e+00 1106.7 1035 60.5
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 0.0e+00 1104.4 1028 60.9
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 0.0e+00 1102.4 995 61.1
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 0.0e+00 1100.9 1007 59.6
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 0.0e+00 1100.9 1003 62.9
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 0.0e+00 1092.8 1030 60.8
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 0.0e+00 1084.7 998 60.8
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 0.0e+00 1080.9 987 60.6
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 0.0e+00 1079.7 876 66.3
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 1.4e-310 1069.7 1019 59.9
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 4.1e-310 1068.1 998 59.4
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 5.3e-310 1067.8 947 62.1
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 6.9e-310 1067.4 1011 59.1
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 9.0e-310 1067.0 774 72.7
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 2.6e-309 1065.4 985 59.7
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 2.9e-308 1062.0 1020 59.1
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 6.7e-305 1050.8 1025 57.9
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.6e-303 1046.2 976 59.3
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 1.4e-302 1043.1 844 63.9
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 2.5e-296 1022.3 979 59.1
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 4.3e-296 1021.5 965 60.8
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 9.7e-296 1020.4 1001 58.2
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.6e-295 1019.6 983 59.0
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 1.6e-295 1019.6 945 59.2
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 3.7e-295 1018.5 997 58.6
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.5e-293 1013.1 945 58.9
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 2.6e-288 995.7 998 57.7
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 2.6e-288 995.7 971 58.1
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 3.3e-288 995.3 1097 54.0
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 1.4e-286 989.9 972 56.9
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 1.8e-286 989.6 972 57.3
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 3.8e-284 981.9 912 59.3
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 7.2e-283 977.6 909 59.3
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 1.6e-282 976.5 856 61.3
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 3.0e-281 972.2 907 59.4
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.1e-280 970.3 831 62.7
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 2.0e-280 969.5 928 58.0
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 3.3e-280 968.8 838 62.3
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 3.3e-280 968.8 976 56.6
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 4.1e-278 961.8 975 55.9
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 4.5e-277 958.4 830 61.9
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 5.9e-277 958.0 850 62.2
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 1.7e-276 956.4 925 58.5
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 3.8e-276 955.3 863 60.4
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 7.2e-275 951.0 777 65.8
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.7e-274 949.1 726 68.2
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 4.7e-274 948.3 884 59.0
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 1.8e-273 946.4 832 61.5
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 9.7e-272 940.6 890 58.2
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 1.7e-271 939.9 965 55.6
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 4.8e-271 938.3 922 57.7
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 5.3e-270 934.9 772 64.4
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 1.2e-269 933.7 962 56.1
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 4.5e-269 931.8 831 60.2
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 4.5e-269 931.8 831 60.2
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 7.7e-269 931.0 976 55.5
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 1.5e-267 926.8 976 55.3
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 1.5e-267 926.8 965 56.6
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 1.2e-266 923.7 965 55.0
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 6.1e-266 921.4 831 59.6
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 6.8e-265 917.9 925 55.0
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 1.4e-257 893.6 891 56.7
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 8.9e-249 864.4 943 51.6
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 4.6e-245 852.0 945 52.4
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 3.3e-235 819.3 834 55.0
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 8.1e-226 788.1 852 53.8
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 4.0e-225 785.8 902 53.0
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 5.8e-224 781.9 931 50.3
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.8e-180 637.5 537 62.8
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 4.8e-162 576.2 1001 42.1
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 6.5e-159 565.8 898 41.1
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 8.8e-148 528.9 882 39.6
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 9.8e-147 525.4 874 40.5
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 8.3e-146 522.3 705 47.7
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 2.8e-141 507.3 613 50.2
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 7.5e-131 472.6 384 62.5
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 3.2e-121 440.7 449 52.8
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.9e-97 361.7 220 80.9
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 6.2e-93 346.7 555 40.9
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 8.1e-93 346.3 1047 31.2
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 3.2e-57 228.0 223 55.6
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 5.5e-57 227.3 769 29.5
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 2.3e-47 195.3 240 45.8
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 3.7e-45 188.0 347 36.3
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 4.8e-45 187.6 344 41.3
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 1.1e-44 186.4 109 80.7
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 5.0e-42 177.6 106 81.1
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 6.3e-37 160.6 91 87.9
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.4e-28 132.1 168 45.8
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 5.9e-27 127.5 299 39.1
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.4e-23 116.3 327 32.1
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 8.9e-23 113.6 73 75.3
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 7.0e-12 77.4 46 78.3
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 6.6e-10 70.9 81 42.0
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 6.2e-08 64.3 81 42.0
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 8.1e-08 63.9 89 38.2
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.1e-07 63.5 81 39.5
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.1e-07 63.5 95 36.8
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.4e-07 63.2 81 40.7
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.1e-07 62.0 82 41.5
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 4.0e-07 61.6 89 38.2
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 4.0e-07 61.6 64 45.3
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 4.0e-07 61.6 64 45.3
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 4.0e-07 61.6 76 43.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 6.8e-07 60.8 89 37.1
HPP92_003096 Vanilla planifolia HOM05D000251 ORTHO05D007889 6.8e-07 60.8 140 35.0
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 8.9e-07 60.5 65 41.5
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 8.9e-07 60.5 88 37.5
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 8.9e-07 60.5 81 38.3
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.2e-06 60.1 95 34.7
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.2e-06 60.1 81 40.7
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 1.5e-06 59.7 135 33.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 1.5e-06 59.7 87 40.2
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 2.0e-06 59.3 94 37.2
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.0e-06 59.3 95 34.7
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.4e-06 58.5 78 41.0
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 3.4e-06 58.5 90 38.9
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 4.4e-06 58.2 88 37.5
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 4.4e-06 58.2 88 37.5
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 4.4e-06 58.2 73 37.0
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 5.8e-06 57.8 81 37.0
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 5.8e-06 57.8 88 37.5
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 7.5e-06 57.4 81 39.5
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 7.5e-06 57.4 88 36.4


User provided reference genes

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