Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 2.4e-69 265.4 133 100.0
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 4.5e-36 154.8 135 67.4
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 5.9e-36 154.5 135 67.4
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 5.9e-36 154.5 135 67.4
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 5.9e-36 154.5 135 67.4
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 7.7e-36 154.1 135 66.7
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 7.7e-36 154.1 135 66.7
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 7.7e-36 154.1 133 67.7
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 1.3e-35 153.3 135 66.7
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.3e-35 153.3 133 67.7
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 1.3e-35 153.3 135 66.7
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 1.3e-35 153.3 135 66.7
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.3e-35 153.3 135 66.7
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 1.3e-35 153.3 135 66.7
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 1.3e-35 153.3 135 66.7
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 66.7
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 65.9
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 65.9
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 65.9
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 65.9
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 66.7
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 66.7
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 66.7
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 65.9
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 65.9
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 1.7e-35 152.9 134 66.4
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 1.7e-35 152.9 135 65.9
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 2.2e-35 152.5 135 66.7
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 2.9e-35 152.1 129 69.0
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 2.9e-35 152.1 135 65.9
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 2.9e-35 152.1 135 65.9
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 3.8e-35 151.8 135 65.2
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 3.8e-35 151.8 135 66.7
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 3.8e-35 151.8 135 65.2
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 3.8e-35 151.8 135 65.2
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 3.8e-35 151.8 135 65.2
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 5.0e-35 151.4 134 66.4
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 5.0e-35 151.4 134 66.4
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 5.0e-35 151.4 134 66.4
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 5.0e-35 151.4 134 66.4
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 5.0e-35 151.4 134 66.4
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 5.0e-35 151.4 135 65.9
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 5.0e-35 151.4 135 65.9
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 5.0e-35 151.4 135 65.9
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 6.5e-35 151.0 135 65.9
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 6.5e-35 151.0 135 65.9
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 65.2
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 65.9
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 65.2
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 65.2
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 65.2
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 65.2
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 65.2
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 64.4
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 64.4
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 65.2
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 8.5e-35 150.6 135 64.4
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 1.1e-34 150.2 135 65.9
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.1e-34 150.2 135 64.4
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 1.1e-34 150.2 135 64.4
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.5e-34 149.8 135 65.2
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 1.9e-34 149.4 135 64.4
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.9e-34 149.4 135 64.4
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 1.9e-34 149.4 132 66.7
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 1.9e-34 149.4 135 65.2
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 1.9e-34 149.4 135 65.2
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 1.9e-34 149.4 135 63.7
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 2.5e-34 149.1 135 64.4
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 2.5e-34 149.1 135 63.7
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 2.5e-34 149.1 135 64.4
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 2.5e-34 149.1 135 64.4
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 2.5e-34 149.1 135 64.4
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 3.2e-34 148.7 135 64.4
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 3.2e-34 148.7 133 65.4
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 3.2e-34 148.7 133 65.4
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 3.2e-34 148.7 133 65.4
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 3.2e-34 148.7 135 64.4
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 3.2e-34 148.7 135 64.4
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 4.2e-34 148.3 133 64.7
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 4.2e-34 148.3 133 64.7
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 5.5e-34 147.9 136 65.4
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 5.5e-34 147.9 135 63.7
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 7.2e-34 147.5 135 63.7
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 7.2e-34 147.5 135 63.7
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 7.2e-34 147.5 135 63.7
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 7.2e-34 147.5 135 63.7
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 9.4e-34 147.1 133 64.7
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 9.4e-34 147.1 134 64.2
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 9.4e-34 147.1 133 64.7
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 9.4e-34 147.1 133 64.7
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 9.4e-34 147.1 135 63.7
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 9.4e-34 147.1 134 63.4
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 1.2e-33 146.7 135 63.7
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.6e-33 146.4 135 61.5
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 1.6e-33 146.4 135 62.2
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 1.6e-33 146.4 135 62.2
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 1.6e-33 146.4 135 63.7
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 2.1e-33 146.0 135 63.7
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 2.1e-33 146.0 135 62.2
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 3.6e-33 145.2 152 60.5
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 4.7e-33 144.8 134 62.7
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 6.1e-33 144.4 135 62.2
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 6.1e-33 144.4 135 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 1.0e-32 143.7 134 61.9
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 2.3e-32 142.5 135 60.7
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 3.0e-32 142.1 135 59.3
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 3.0e-32 142.1 128 64.8
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 4.0e-32 141.7 128 65.6
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 4.0e-32 141.7 135 60.0
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 5.2e-32 141.4 135 59.3
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 6.8e-32 141.0 133 59.4
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 6.8e-32 141.0 135 58.5
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 8.8e-32 140.6 134 59.7
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 8.8e-32 140.6 133 59.4
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 1.5e-31 139.8 135 57.8
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 2.6e-31 139.0 134 59.0
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 2.6e-31 139.0 135 58.5
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 2.6e-31 139.0 135 58.5
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 2.6e-31 139.0 135 58.5
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 2.6e-31 139.0 135 58.5
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 2.6e-31 139.0 135 58.5
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 2.6e-31 139.0 135 58.5
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 3.4e-31 138.7 133 58.6
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 4.4e-31 138.3 132 59.1
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 7.5e-31 137.5 132 59.8
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 7.5e-31 137.5 135 57.8
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 7.5e-31 137.5 135 57.8
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 7.5e-31 137.5 135 57.8
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 9.7e-31 137.1 135 57.8
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 1.3e-30 136.7 132 58.3
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 1.3e-30 136.7 132 58.3
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 1.3e-30 136.7 132 58.3
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 1.3e-30 136.7 132 58.3
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 1.3e-30 136.7 132 58.3
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.7e-30 136.3 132 58.3
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 2.8e-30 135.6 135 57.0
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 2.8e-30 135.6 135 57.0
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 2.8e-30 135.6 135 57.0
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 2.8e-30 135.6 135 57.0
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 2.8e-30 135.6 135 57.0
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 6.3e-30 134.4 132 57.6
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 8.3e-30 134.0 133 59.4
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 5.3e-29 131.3 133 60.2
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 7.0e-29 131.0 135 59.3
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 9.1e-29 130.6 132 58.3
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 7.7e-28 127.5 129 58.9
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 5.0e-27 124.8 129 54.3
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 6.1e-25 117.9 59 100.0
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.8e-24 116.3 59 98.3
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.3e-24 115.9 58 96.6
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 1.2e-23 113.6 62 87.1
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 9.8e-23 110.5 134 47.0
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 1.8e-21 106.3 114 57.0
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 7.0e-21 104.4 108 60.2
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 2.0e-20 102.8 108 59.3
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 2.0e-20 102.8 108 59.3
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 4.5e-20 101.7 137 54.0
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 5.9e-20 101.3 108 58.3
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 5.9e-20 101.3 108 58.3
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 7.7e-20 100.9 52 98.1
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 6.6e-19 97.8 106 57.5
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 6.6e-19 97.8 108 55.6
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 8.6e-19 97.4 52 94.2
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 8.6e-19 97.4 52 94.2
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 4.2e-18 95.1 107 54.2
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 3.6e-17 92.0 126 42.1
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-16 90.5 108 53.7
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 2.3e-16 89.4 130 47.7
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 1.1e-13 80.5 105 47.6
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 2.0e-12 76.3 98 51.0
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 4.7e-09 65.1 128 33.6
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-06 56.6 43 69.8


User provided reference genes

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