Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 3.2e-248 861.7 568 100.0
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 5.0e-193 678.3 571 85.6
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 2.3e-174 616.3 580 77.8
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 1.1e-168 597.4 581 76.4
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 2.8e-151 539.7 560 70.0
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 5.3e-150 535.4 584 71.1
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 7.8e-146 521.5 581 58.9
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 2.1e-143 513.5 570 61.9
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.8e-142 510.4 582 67.7
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 1.5e-141 507.3 576 69.3
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 2.0e-141 506.9 531 62.7
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 2.6e-141 506.5 502 69.5
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.7e-138 496.5 581 62.5
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 7.4e-136 488.4 617 62.9
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.6e-135 487.3 527 70.6
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.5e-131 473.4 572 55.6
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 1.6e-130 470.7 581 66.1
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 1.0e-129 468.0 572 64.0
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 8.2e-127 458.4 582 65.1
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.1e-126 458.0 570 63.2
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.1e-126 458.0 647 51.5
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 1.4e-126 457.6 575 63.1
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 7.6e-125 451.8 570 53.5
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 8.4e-124 448.4 582 55.2
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.9e-123 447.2 547 63.3
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.5e-120 437.6 573 65.3
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 2.5e-120 436.8 573 65.1
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 4.3e-120 436.0 543 64.6
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.3e-119 434.5 560 61.6
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 2.2e-119 433.7 576 65.1
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 3.7e-119 433.0 561 63.8
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 6.9e-118 428.7 586 54.6
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 9.0e-118 428.3 581 53.4
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 1.2e-117 427.9 538 49.8
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 2.9e-116 423.3 567 60.1
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.9e-115 420.6 570 63.3
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 5.5e-115 419.1 565 61.2
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 1.6e-114 417.5 570 60.9
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 4.6e-114 416.0 455 69.9
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 1.8e-113 414.1 469 67.4
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 5.1e-113 412.5 559 62.6
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 9.1e-110 401.7 584 53.1
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 1.7e-108 397.5 541 60.6
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 5.0e-108 396.0 579 49.4
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 1.9e-107 394.0 578 49.1
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 9.4e-107 391.7 497 52.5
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 1.2e-106 391.3 529 61.6
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 2.7e-106 390.2 570 49.1
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 1.4e-105 387.9 438 61.2
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 3.3e-104 383.3 567 58.7
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 1.3e-103 381.3 569 58.9
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 2.8e-103 380.2 465 54.4
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 3.7e-103 379.8 567 49.6
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 3.7e-103 379.8 526 61.4
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 1.8e-102 377.5 572 49.5
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 3.1e-102 376.7 525 52.6
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 7.7e-101 372.1 547 61.1
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 1.3e-100 371.3 605 53.1
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.7e-100 370.9 568 55.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 5.0e-100 369.4 533 60.8
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 4.2e-99 366.3 569 56.4
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 3.6e-98 363.2 570 47.0
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 3.6e-98 363.2 568 56.3
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 3.6e-98 363.2 468 51.7
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 3.6e-98 363.2 425 67.8
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 4.7e-98 362.8 577 56.0
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 6.1e-98 362.5 577 57.4
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 1.4e-97 361.3 568 56.7
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 3.9e-97 359.8 469 55.9
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 5.2e-97 359.4 524 58.0
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 1.1e-96 358.2 580 53.3
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 3.3e-96 356.7 568 56.9
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 4.4e-96 356.3 569 57.6
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 5.7e-96 355.9 455 61.8
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 5.7e-96 355.9 580 47.9
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 6.3e-95 352.4 538 58.4
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.1e-94 351.7 497 51.5
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 4.1e-94 349.7 568 56.7
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 1.9e-91 340.9 567 56.3
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.5e-91 339.3 558 46.4
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 8.0e-90 335.5 568 55.6
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.3e-89 334.0 573 49.4
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 8.8e-89 332.0 550 48.5
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 7.5e-88 328.9 466 62.9
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 1.3e-87 328.2 567 54.9
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 2.2e-87 327.4 469 62.3
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 7.0e-86 322.4 565 55.6
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 2.0e-85 320.9 503 52.1
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.7e-84 317.8 289 74.4
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 2.2e-84 317.4 566 52.8
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 2.9e-84 317.0 556 54.3
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.2e-83 313.5 568 38.9
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.7e-82 310.5 455 42.6
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 3.0e-81 307.0 466 50.6
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 9.8e-80 302.0 566 37.6
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 8.3e-79 298.9 326 60.1
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 1.8e-78 297.7 543 51.4
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 1.2e-77 295.0 489 48.3
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.7e-76 291.2 468 49.6
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 2.8e-74 283.9 533 44.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 6.8e-73 279.3 493 52.3
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 4.1e-70 270.0 324 59.3
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 1.6e-66 258.1 300 62.3
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 3.2e-62 243.8 249 54.6
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 1.2e-58 231.9 203 78.3
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.6e-45 188.3 325 47.7
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.3e-44 185.3 211 50.7
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.6e-42 178.3 139 63.3
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 6.8e-41 172.9 129 66.7
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.7e-36 158.3 458 31.7
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 6.9e-33 146.4 349 28.9
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.2e-32 145.6 96 71.9
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 2.9e-31 141.0 402 33.6
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 1.1e-27 129.0 156 46.2
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.2e-23 114.8 336 26.2
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.2e-22 110.9 85 65.9
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 5.4e-22 110.2 85 64.7
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 2.1e-21 108.2 84 65.5
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.1e-21 108.2 316 37.3
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 2.5e-19 101.3 154 41.6
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 2.4e-17 94.7 172 34.3
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 2.4e-17 94.7 98 58.2
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 3.1e-17 94.4 191 30.9
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 9.0e-17 92.8 73 68.5
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.5e-14 84.7 60 68.3
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 2.7e-13 81.3 54 70.4
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.6e-13 80.5 141 31.9
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 5.1e-12 77.0 139 32.4
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.1e-11 75.9 46 80.4
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 1.4e-09 68.9 115 37.4
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 8.4e-07 59.7 86 44.2
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 7.1e-06 56.6 31 87.1


User provided reference genes

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