Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 2.5e-209 732.6 645 100.0
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 6.5e-189 664.8 649 94.3
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 8.7e-125 451.8 648 79.9
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 7.6e-113 412.1 620 79.4
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 2.2e-112 410.6 630 77.0
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 8.7e-109 398.7 624 76.6
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 2.5e-108 397.1 641 76.1
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 1.4e-106 391.3 645 75.5
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 3.4e-105 386.7 641 74.9
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 4.5e-105 386.3 645 74.7
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 7.6e-105 385.6 654 74.5
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.2e-104 384.0 641 74.7
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 2.9e-104 383.6 641 74.1
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 5.1e-101 372.9 611 76.3
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 6.3e-99 365.9 651 72.5
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 8.2e-99 365.5 613 75.9
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 1.1e-98 365.2 669 70.6
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 1.8e-98 364.4 640 74.2
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.1e-98 363.2 650 73.7
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 9.0e-98 362.1 629 73.0
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 1.2e-97 361.7 613 75.2
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 1.2e-97 361.7 615 75.9
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 2.0e-97 360.9 635 73.7
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 3.4e-97 360.1 630 73.8
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 5.9e-97 359.4 626 74.6
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 1.3e-96 358.2 648 72.7
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 2.9e-96 357.1 644 72.8
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 2.9e-96 357.1 640 73.1
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 3.8e-96 356.7 613 75.2
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 8.5e-96 355.5 671 71.4
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 1.1e-95 355.1 637 72.1
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 1.9e-95 354.4 644 73.4
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 7.2e-95 352.4 649 72.6
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 9.3e-95 352.1 635 72.6
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 2.1e-94 350.9 658 71.0
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 3.6e-94 350.1 585 68.4
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 6.1e-94 349.4 660 71.1
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 6.1e-94 349.4 651 70.8
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 7.9e-94 349.0 628 73.2
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 1.0e-93 348.6 635 72.3
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 3.0e-93 347.1 631 73.2
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 3.9e-93 346.7 645 70.5
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 6.7e-93 345.9 676 68.5
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 8.8e-93 345.5 636 72.6
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 8.8e-93 345.5 647 72.8
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 3.3e-92 343.6 549 80.9
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 4.3e-92 343.2 647 71.9
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 5.7e-92 342.8 674 68.5
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 3.7e-91 340.1 628 72.9
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 6.3e-91 339.3 647 71.1
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 8.2e-91 339.0 676 68.2
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.4e-90 338.2 689 68.4
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 3.1e-90 337.0 675 68.3
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 2.0e-89 334.3 719 53.0
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 5.9e-89 332.8 630 72.4
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 2.9e-88 330.5 661 69.0
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 5.5e-87 326.2 614 72.3
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 7.2e-87 325.9 663 69.7
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 1.6e-86 324.7 598 74.9
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 4.7e-86 323.2 617 71.2
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 1.0e-85 322.0 646 70.6
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 5.1e-85 319.7 604 72.7
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 5.1e-85 319.7 604 72.7
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 6.7e-85 319.3 581 74.7
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 1.5e-84 318.2 608 71.7
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 4.4e-84 316.6 628 69.4
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 4.4e-84 316.6 628 69.7
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 4.4e-84 316.6 614 71.5
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 5.7e-84 316.2 543 79.2
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 9.7e-84 315.5 637 69.1
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 9.7e-84 315.5 701 45.4
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 3.7e-83 313.5 614 71.5
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 8.2e-83 312.4 615 71.4
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 8.2e-83 312.4 615 71.4
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.4e-82 311.6 617 70.7
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.4e-82 311.6 642 68.5
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.8e-82 311.2 615 70.9
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 4.5e-81 306.6 530 79.8
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 5.9e-81 306.2 530 79.8
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 1.3e-80 305.1 618 71.0
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 3.8e-80 303.5 681 66.2
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 3.8e-80 303.5 551 77.7
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.4e-79 301.6 679 66.3
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 3.6e-78 297.0 663 68.6
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 8.0e-78 295.8 652 56.3
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 8.8e-77 292.4 602 71.6
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 2.6e-76 290.8 543 75.5
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 1.3e-75 288.5 646 68.1
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 1.7e-75 288.1 549 40.6
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 6.1e-70 269.6 520 77.5
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 3.0e-69 267.3 242 59.1
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 9.7e-68 262.3 611 63.5
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 2.0e-65 254.6 691 58.0
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.7e-62 243.4 643 61.6
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 1.0e-61 242.3 218 60.1
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 8.3e-59 232.6 474 74.9
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 2.4e-58 231.1 249 51.0
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 3.3e-47 194.1 157 59.2
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 5.6e-47 193.4 479 75.6
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 1.4e-42 178.7 236 47.0
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 8.0e-38 162.9 194 62.9
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.3e-35 155.6 197 50.3
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 8.3e-35 152.9 110 61.8
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 1.5e-31 142.1 194 43.8
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 4.3e-31 140.6 116 55.2
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 5.2e-29 133.7 163 49.7
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 2.0e-28 131.7 162 44.4
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.6e-28 131.3 102 61.8
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 4.4e-28 130.6 110 56.4
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 5.8e-28 130.2 83 75.9
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.7e-27 127.5 83 75.9
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 1.1e-21 109.4 99 60.6
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 1.7e-19 102.1 120 42.5
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 3.2e-18 97.8 195 30.8
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 4.6e-17 94.0 185 38.4
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.2e-14 85.9 158 34.2
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.1e-13 82.8 74 91.9


User provided reference genes

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