Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014002 Carpinus fangiana HOM05D007020 ORTHO05D008935 1.2e-183 646.4 333 100.0
Haze_22697 Corylus avellana HOM05D007020 ORTHO05D008935 2.9e-164 582.0 330 93.0
CiPaw.07G144000 Carya illinoinensis HOM05D007020 ORTHO05D008935 4.3e-128 461.8 329 75.1
QL02p012883 Quercus lobata HOM05D007020 ORTHO05D008935 2.1e-127 459.5 332 75.3
vmacro21850 Vaccinium macrocarpon HOM05D007020 ORTHO05D008935 2.3e-113 412.9 320 69.7
Dinv31889 Davidia involucrata HOM05D007020 ORTHO05D008935 8.8e-113 411.0 317 68.8
Rhsim06G0012300 Rhododendron simsii HOM05D007020 ORTHO05D008935 2.4e-110 402.9 307 68.4
TAR633G1459 Trochodendron aralioides HOM05D007020 ORTHO05D008935 1.3e-108 397.1 333 64.9
TAR376G1009 Trochodendron aralioides HOM05D007020 ORTHO05D008935 2.5e-107 392.9 332 65.7
Manes.06G014100 Manihot esculenta HOM05D007020 ORTHO05D008935 5.5e-107 391.7 334 65.9
Eucgr.F03712 Eucalyptus grandis HOM05D007020 ORTHO05D008935 2.1e-106 389.8 335 64.5
Solyc04g081920.3 Solanum lycopersicum HOM05D007020 ORTHO05D008935 3.6e-106 389.0 309 66.7
PGSC0003DMG400009884 Solanum tuberosum HOM05D007020 ORTHO05D008935 2.3e-105 386.3 317 65.6
arahy.Tifrunner.gnm1.ann1.YGS75T Arachis hypogaea HOM05D007020 ORTHO05D008935 6.7e-105 384.8 324 64.8
Potri.002G016800 Populus trichocarpa HOM05D007020 ORTHO05D008935 6.7e-105 384.8 326 66.0
Ciclev10001736m.g Citrus clementina HOM05D007020 ORTHO05D008935 8.8e-105 384.4 326 66.3
Sabra02G0013400 Salix brachista HOM05D007020 ORTHO05D008935 2.0e-104 383.3 326 65.6
Hma1.2p1_1598F.1_g292900 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 4.4e-104 382.1 330 64.5
CAN.G311.66 Capsicum annuum HOM05D007020 ORTHO05D008935 7.4e-104 381.3 273 71.4
arahy.Tifrunner.gnm1.ann1.W20NI2 Arachis hypogaea HOM05D007020 ORTHO05D008935 1.3e-103 380.6 324 64.2
GSVIVG01008746001 Vitis vinifera HOM05D007020 ORTHO05D008935 1.7e-103 380.2 330 65.5
Cpa.g.sc26.268 Carica papaya HOM05D007020 ORTHO05D008935 4.8e-103 378.6 328 62.8
Lj4A801T43 Lonicera japonica HOM05D007020 ORTHO05D008935 4.8e-103 378.6 337 61.7
PSO170G4315 Papaver somniferum HOM05D007020 ORTHO05D008935 4.8e-103 378.6 332 61.1
Nitab4.5_0003030g0130 Nicotiana tabacum HOM05D007020 ORTHO05D008935 1.1e-102 377.5 308 64.6
Atru.chr13.224 Acer truncatum HOM05D007020 ORTHO05D008935 3.1e-102 375.9 317 67.8
THA.LOC104809629 Tarenaya hassleriana HOM05D007020 ORTHO05D008935 3.5e-101 372.5 304 65.5
TWI36G0910 Tripterygium wilfordii HOM05D007020 ORTHO05D008935 2.2e-100 369.8 308 64.9
Lalb_Chr08g0246281 Lupinus albus HOM05D007020 ORTHO05D008935 3.8e-100 369.0 335 64.5
Sp5g31160 Schrenkiella parvula HOM05D007020 ORTHO05D008935 5.5e-99 365.2 308 65.3
Thecc.08G051000 Theobroma cacao HOM05D007020 ORTHO05D008935 5.5e-99 365.2 335 62.4
ClCG08G014040 Citrullus lanatus HOM05D007020 ORTHO05D008935 9.4e-99 364.4 315 65.4
Duzib093G0969 Durio zibethinus HOM05D007020 ORTHO05D008935 9.4e-99 364.4 330 63.6
Medtr3g114540 Medicago truncatula HOM05D007020 ORTHO05D008935 9.4e-99 364.4 336 62.2
Gohir.D05G186100 Gossypium hirsutum HOM05D007020 ORTHO05D008935 2.1e-98 363.2 333 62.5
Gorai.009G191500 Gossypium raimondii HOM05D000059 ORTHO05D008935 2.1e-98 363.2 289 67.8
Oeu014023.1 Olea europaea HOM05D007020 ORTHO05D008935 2.1e-98 363.2 361 56.5
Sed0026116 Sechium edule HOM05D007020 ORTHO05D008935 2.1e-98 363.2 323 63.8
MSTRG.25275 Avicennia marina HOM05D000001 ORTHO05D009837 3.6e-98 362.5 317 63.1
MELO3C011342.2 Cucumis melo HOM05D007020 ORTHO05D008935 3.6e-98 362.5 313 64.9
SalBow7G4579 Salvia bowleyana HOM05D000001 ORTHO05D009837 4.7e-98 362.1 321 62.0
Gohir.A05G183200 Gossypium hirsutum HOM05D007020 ORTHO05D008935 1.4e-97 360.5 333 62.5
PGR031G0358 Punica granatum HOM05D007020 ORTHO05D008935 1.4e-97 360.5 331 60.1
Peaxi162Scf00174g00717 Petunia axillaris HOM05D007020 ORTHO05D008935 1.8e-97 360.1 307 63.2
Psat5g012400 Pisum sativum HOM05D007020 ORTHO05D008935 3.0e-97 359.4 334 62.6
Ca_15469_v3 Cicer arietinum L. HOM05D007020 ORTHO05D008935 5.2e-97 358.6 313 64.2
Cc10_g01170 Coffea canephora HOM05D007020 ORTHO05D008935 5.2e-97 358.6 290 63.4
Carub.0002s2293 Capsella rubella HOM05D007020 ORTHO05D008935 1.1e-96 357.5 312 64.4
CsaV3_2G024410 Cucumis sativus L. HOM05D007020 ORTHO05D008935 4.4e-96 355.5 316 64.2
DCAR_022941 Daucus carota HOM05D007020 ORTHO05D008935 4.4e-96 355.5 296 63.5
Thhalv10018588m.g Eutrema salsugineum HOM05D007020 ORTHO05D008935 4.4e-96 355.5 277 68.6
SGA_v2.0_scaffold96G28944 Striga asiatica HOM05D007020 ORTHO05D008935 7.4e-96 354.8 300 61.7
BcaC08g47303 Brassica carinata HOM05D007020 ORTHO05D008935 1.3e-95 354.0 320 61.9
CDE02G2299 Ceratophyllum demersum HOM05D000059 ORTHO05D008935 1.3e-95 354.0 270 66.7
Phvul.009G019500 Phaseolus vulgaris HOM05D007020 ORTHO05D008935 1.3e-95 354.0 335 61.5
TPR.G38245 Trifolium pratense HOM05D007020 ORTHO05D008935 1.7e-95 353.6 321 61.4
Glyma.04G020900 Glycine max HOM05D007020 ORTHO05D008935 4.8e-95 352.1 274 68.2
Migut.C00895 Erythranthe guttata HOM05D007020 ORTHO05D008935 8.2e-95 351.3 331 58.6
HanXRQChr05g0146601 Helianthus annuus HOM05D007020 ORTHO05D008935 1.1e-94 350.9 320 59.1
BcaC08g47097 Brassica carinata HOM05D007020 ORTHO05D008935 3.1e-94 349.4 317 61.5
CARHR069580 Cardamine hirsuta HOM05D007020 ORTHO05D008935 3.1e-94 349.4 323 61.3
AL2G36070 Arabidopsis lyrata HOM05D007020 ORTHO05D008935 1.6e-93 347.1 258 68.2
COL.COLO4_26091 Corchorus olitorius HOM05D007020 ORTHO05D008935 2.6e-93 346.3 271 69.4
Lj1g0017386 Lotus japonicus HOM05D007020 ORTHO05D008935 3.5e-93 345.9 321 62.0
Lsat_1_v5_gn_0_761 Lactuca sativa HOM05D007020 ORTHO05D008935 4.5e-93 345.5 339 59.0
AT1G76050 Arabidopsis thaliana HOM05D007020 ORTHO05D008935 5.9e-93 345.1 314 61.8
BolC6t40035H Brassica oleracea HOM05D007020 ORTHO05D008935 5.9e-93 345.1 322 61.2
BraA07t31686Z Brassica rapa HOM05D007020 ORTHO05D008935 2.9e-92 342.8 313 61.0
A07p41540 Brassica napus HOM05D007020 ORTHO05D008935 3.8e-92 342.4 313 61.0
Aa31LG4G6160 Aethionema arabicum HOM05D000059 ORTHO05D000128 5.0e-92 342.0 346 57.8
Sc26g0004460 Simmondsia chinensis HOM05D007020 ORTHO05D008935 5.0e-92 342.0 320 58.4
VMungo1309G1583 Vigna mungo HOM05D007020 ORTHO05D008935 5.0e-92 342.0 360 56.4
Aqoxy6G02012 Aquilegia oxysepala HOM05D007020 ORTHO05D008935 6.5e-92 341.7 244 69.3
ECA232G4433 Erigeron canadensis HOM05D007020 ORTHO05D008935 1.1e-91 340.9 333 58.0
ATR0661G229 Amborella trichopoda HOM05D007020 ORTHO05D008935 7.2e-91 338.2 290 59.7
C06p49960 Brassica napus HOM05D007020 ORTHO05D008935 3.6e-90 335.9 345 57.4
AUR62013887 Chenopodium quinoa HOM05D007020 ORTHO05D008935 3.6e-90 335.9 312 59.6
Ah.11g040270 Amaranthus hybridus HOM05D007020 ORTHO05D008935 3.0e-89 332.8 275 63.6
Hund05155 Selenicereus undatus HOM05D007020 ORTHO05D008935 4.4e-88 328.9 310 60.6
Zm00001eb272250 Zea mays HOM05D007020 ORTHO05D008935 7.0e-86 321.6 275 61.1
MBI17_g14568_MAGBIO Magnolia biondii HOM05D007020 ORTHO05D008935 1.2e-85 320.9 321 57.0
Os06g0717400 Oryza sativa ssp. japonica HOM05D007020 ORTHO05D008935 5.9e-85 318.5 273 61.5
EL10Ac1g02092 Beta vulgaris HOM05D007020 ORTHO05D008935 1.5e-83 313.9 318 56.3
Sopen04g035560 Solanum pennellii HOM05D007020 ORTHO05D008935 3.7e-79 299.3 242 67.4
SGA_v2.0_scaffold173G39193 Striga asiatica HOM05D003133 ORTHO05D003642 5.4e-78 295.4 319 53.9
SEGI_18542 Sequoiadendron giganteum HOM05D007020 ORTHO05D008935 2.0e-77 293.5 293 52.6
Actinidia17018 Actinidia chinensis HOM05D007020 ORTHO05D008935 2.1e-74 283.5 246 66.3
SHI08019 Sapria himalayana HOM05D007020 ORTHO05D008935 1.8e-70 270.4 281 54.1
AUR62036707 Chenopodium quinoa HOM05D007020 ORTHO05D008935 1.0e-68 264.6 257 55.6
HPP92_004932 Vanilla planifolia HOM05D007020 ORTHO05D008935 5.0e-68 262.3 205 65.9
Mapoly0092s0023 Marchantia polymorpha HOM05D007020 ORTHO05D008935 1.3e-63 247.7 302 47.4
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 2.9e-63 246.5 316 44.6
AagrBONN_evm.TU.Sc2ySwM_228.144 Anthoceros agrestis HOM05D007020 ORTHO05D008935 1.8e-57 227.3 252 49.2
SMO169G0131 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 8.3e-55 218.4 288 46.2
PRCOL_00000246 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 9.2e-46 188.3 309 40.5
Cre02.g078750 Chlamydomonas reinhardtii HOM05D007020 ORTHO05D008935 1.7e-44 184.1 275 42.5
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 1.7e-44 184.1 255 40.4
CBR_g29446 Chara braunii HOM05D007020 ORTHO05D008935 6.6e-44 182.2 336 37.2
CSS0023482 Camellia sinensis var. sinensis HOM05D007020 ORTHO05D008935 8.6e-44 181.8 243 48.6
Thecc.08G050800 Theobroma cacao HOM05D007020 ORTHO05D008935 2.6e-40 170.2 214 48.6
Nn3g20659 Nelumbo nucifera HOM05D007020 ORTHO05D008935 7.6e-40 168.7 142 62.0
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 1.9e-38 164.1 242 39.3
Glyma.06G021150 Glycine max HOM05D007020 ORTHO05D008935 5.4e-22 109.4 122 56.6
Glyma.06G021100 Glycine max HOM05D007020 ORTHO05D008935 2.5e-19 100.5 96 52.1
Actinidia15460 Actinidia chinensis HOM05D007020 ORTHO05D008935 5.6e-19 99.4 79 63.3
SMO169G0279 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 4.6e-13 79.7 124 40.3
Haze_22708 Corylus avellana HOM05D007020 ORTHO05D008935 7.9e-13 79.0 44 88.6
PRCOL_00005352 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 1.0e-12 78.6 187 28.9
AUR62036706 Chenopodium quinoa HOM05D007020 ORTHO05D000002 5.1e-12 76.3 124 42.7
Hma1.2p1_1598F.1_g292910 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 9.6e-11 72.0 61 62.3
MCO11G777 Micromonas commoda HOM05D007020 ORTHO05D008935 2.1e-10 70.9 149 34.9
MCO04G266 Micromonas commoda HOM05D007020 ORTHO05D008102 5.3e-09 66.2 143 26.6
PRCOL_00004873 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 6.5e-07 59.3 172 28.5
SMO169G0259 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 6.5e-07 59.3 86 41.9
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 1.4e-06 58.2 183 23.0


User provided reference genes

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