Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1335.9 649 100.0
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1261.5 645 95.0
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1254.2 647 93.5
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1248.8 645 92.6
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1246.9 647 92.3
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1244.6 645 91.9
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1239.2 646 91.6
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1238.4 644 91.6
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1238.4 646 91.5
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1229.9 650 90.9
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1229.9 645 91.2
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1227.2 653 90.2
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1226.8 646 91.0
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1226.8 650 90.6
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1225.3 648 90.6
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1224.5 650 90.6
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1224.2 647 90.9
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1223.8 645 90.2
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1223.4 645 90.1
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1221.8 650 90.3
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1218.8 649 92.8
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1218.4 645 90.1
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1217.2 645 90.2
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1216.1 652 90.6
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1215.3 645 90.1
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1214.5 645 90.5
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1213.7 646 89.8
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1213.0 645 90.1
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1212.2 650 88.9
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1211.1 645 89.3
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1210.3 650 89.7
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1209.5 643 89.9
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1209.1 642 89.9
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1208.7 647 89.6
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1208.7 651 90.3
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1208.0 645 89.3
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1207.6 648 89.4
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1207.2 646 88.7
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1202.6 636 90.4
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1201.8 642 89.3
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1201.0 649 88.4
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1200.3 645 88.5
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1197.2 641 89.1
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1196.0 643 88.0
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1193.7 642 89.1
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1191.8 642 88.9
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 643 87.9
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1187.9 642 88.0
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1187.9 648 87.2
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1187.9 644 88.8
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1187.6 644 87.3
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1186.4 643 88.2
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1186.4 644 87.6
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1185.6 643 87.2
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1183.3 644 87.0
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 647 86.2
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 642 88.6
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 642 87.4
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 646 87.0
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 646 87.6
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 642 86.3
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 643 88.0
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 647 88.1
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 643 87.2
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 641 88.0
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 648 86.4
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 650 86.0
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 644 86.2
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 643 87.4
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 652 88.2
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 643 86.5
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 640 87.8
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 642 85.8
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 643 86.8
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 650 86.0
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 650 86.0
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 647 87.0
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1172.9 650 86.2
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 641 87.4
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 653 87.9
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 645 85.7
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 650 86.0
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 650 85.7
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 642 87.4
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 643 85.8
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 642 84.7
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 642 84.7
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 643 85.7
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 646 85.6
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 647 85.8
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 597 92.6
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 644 85.9
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 642 84.3
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 650 86.3
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 644 86.2
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1147.9 646 85.6
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 710 78.6
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1124.4 618 85.3
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1121.7 596 90.4
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1117.4 621 85.0
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1115.5 588 89.3
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1109.4 615 89.6
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1106.7 642 81.6
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1092.4 646 81.3
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 0.0e+00 1087.8 645 82.2
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 0.0e+00 1081.6 666 78.5
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.0e-303 1044.3 583 84.0
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 3.7e-301 1037.7 544 89.3
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.1e-300 1034.2 610 79.8
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.7e-298 1028.9 575 83.5
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 2.9e-298 1028.1 595 81.7
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.0e-290 1003.0 562 82.9
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.6e-288 995.7 553 83.4
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 4.2e-252 874.8 474 86.9
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 2.9e-229 798.9 513 74.1
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 1.1e-204 717.2 424 84.2
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 2.2e-197 693.0 393 83.0
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 4.1e-191 672.2 581 59.2
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 2.3e-149 533.5 267 94.8
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.3e-125 453.8 578 45.7
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 2.4e-74 284.3 225 63.1
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 8.0e-70 269.2 125 97.6
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 7.3e-47 193.0 149 65.8
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.2e-44 185.7 104 83.7
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 2.7e-41 174.5 97 89.7
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 5.2e-37 160.2 150 59.3
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.5e-20 104.0 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.9e-19 100.5 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 6.0e-09 67.0 32 96.9


User provided reference genes

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