Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010787 Carpinus fangiana HOM05D003957 ORTHO05D004833 2.6e-152 542.0 266 100.0
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 6.7e-55 218.4 125 86.4
Cfa010780 Carpinus fangiana HOM05D003957 ORTHO05D004833 3.2e-49 199.5 137 75.2
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 1.9e-38 163.7 125 68.8
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 5.9e-35 152.1 124 66.1
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 1.3e-34 151.0 129 59.7
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 2.5e-30 136.7 148 49.3
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 7.4e-30 135.2 129 56.6
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 2.2e-29 133.7 125 59.2
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 2.8e-29 133.3 125 57.6
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 3.7e-29 132.9 125 57.6
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 3.7e-29 132.9 126 57.1
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.1e-28 131.3 124 54.8
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 1.1e-28 131.3 125 58.4
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 1.1e-28 131.3 125 54.4
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 4.1e-28 129.4 125 54.4
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 5.3e-28 129.0 125 57.6
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 5.3e-28 129.0 125 55.2
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 1.2e-27 127.9 128 52.3
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 1.5e-27 127.5 125 57.6
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 1.5e-27 127.5 127 53.5
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 1.5e-27 127.5 125 55.2
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 2.0e-27 127.1 125 56.0
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 3.4e-27 126.3 125 54.4
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 3.4e-27 126.3 126 55.6
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 4.5e-27 125.9 127 53.5
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 7.7e-27 125.2 125 54.4
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 2.2e-26 123.6 128 52.3
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 3.8e-26 122.9 126 56.3
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 6.5e-26 122.1 128 50.8
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 8.5e-26 121.7 125 52.0
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 1.1e-25 121.3 125 52.0
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 1.9e-25 120.6 125 51.2
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 1.9e-25 120.6 125 51.2
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 2.5e-25 120.2 139 49.6
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 9.4e-25 118.2 101 61.4
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 9.4e-25 118.2 125 52.8
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 2.1e-24 117.1 130 53.1
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 2.1e-24 117.1 125 50.4
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 2.1e-24 117.1 125 50.4
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 2.7e-24 116.7 132 54.5
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 4.7e-24 115.9 122 51.6
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 1.8e-23 114.0 125 49.6
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 3.0e-23 113.2 125 47.2
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 3.0e-23 113.2 130 53.8
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.0e-23 113.2 127 56.7
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 8.8e-23 111.7 127 47.2
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 8.8e-23 111.7 119 55.5
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 8.8e-23 111.7 121 49.6
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 3.3e-22 109.8 102 56.9
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 2.2e-21 107.1 126 50.8
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 4.8e-21 105.9 124 46.8
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 6.3e-21 105.5 89 59.6
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 6.3e-21 105.5 130 45.4
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 8.2e-21 105.1 125 46.4
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.1e-20 104.8 130 45.4
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 1.4e-20 104.4 130 43.8
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 4.1e-20 102.8 134 47.8
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 4.1e-20 102.8 119 50.4
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 5.3e-20 102.4 115 49.6
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.2e-19 101.3 124 50.8
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 2.6e-19 100.1 86 62.8
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 5.9e-19 99.0 69 71.0
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 5.9e-19 99.0 124 50.0
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 7.7e-19 98.6 69 72.5
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 1.0e-18 98.2 69 71.0
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 1.0e-18 98.2 69 71.0
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 1.3e-18 97.8 89 56.2
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.2e-18 97.1 84 61.9
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.2e-18 97.1 84 61.9
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 2.2e-18 97.1 71 69.0
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 3.8e-18 96.3 69 69.6
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 3.8e-18 96.3 69 69.6
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 5.0e-18 95.9 69 69.6
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 6.5e-18 95.5 124 46.0
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 8.5e-18 95.1 125 44.8
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 8.5e-18 95.1 121 45.5
Haze_03193 Corylus avellana HOM05D000309 ORTHO05D000008 1.9e-17 94.0 46 95.7
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 1.9e-17 94.0 82 58.5
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 1.9e-17 94.0 64 73.4
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 2.5e-17 93.6 125 47.2
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 2.5e-17 93.6 69 71.0
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 7.2e-17 92.0 69 71.0
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 1.2e-16 91.3 69 68.1
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 1.2e-16 91.3 69 68.1
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 1.2e-16 91.3 118 44.1
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 2.1e-16 90.5 64 71.9
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 2.1e-16 90.5 64 71.9
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 2.1e-16 90.5 64 71.9
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 2.7e-16 90.1 68 69.1
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 2.7e-16 90.1 69 66.7
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 3.6e-16 89.7 45 93.3
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 3.6e-16 89.7 69 68.1
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 3.6e-16 89.7 45 93.3
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 4.7e-16 89.4 69 68.1
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 4.7e-16 89.4 45 93.3
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 6.1e-16 89.0 45 91.1
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 6.1e-16 89.0 45 91.1
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 6.1e-16 89.0 45 91.1
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 8.0e-16 88.6 45 91.1
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 8.0e-16 88.6 45 91.1
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 8.0e-16 88.6 68 67.6
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.0e-15 88.2 70 64.3
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 1.4e-15 87.8 45 88.9
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.4e-15 87.8 69 66.7
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 1.4e-15 87.8 69 66.7
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 2.3e-15 87.0 79 55.7
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 3.0e-15 86.7 45 88.9
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 3.9e-15 86.3 69 66.7
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 3.9e-15 86.3 45 86.7
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 5.2e-15 85.9 45 88.9
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 6.7e-15 85.5 45 88.9
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 6.7e-15 85.5 89 53.9
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 8.8e-15 85.1 45 86.7
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 8.8e-15 85.1 45 84.4
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 8.8e-15 85.1 45 86.7
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 1.1e-14 84.7 45 84.4
CSS0008275 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.1e-14 84.7 113 46.0
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 1.5e-14 84.3 45 82.2
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.0e-14 84.0 45 82.2
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 2.0e-14 84.0 74 59.5
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 2.6e-14 83.6 45 84.4
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 3.3e-14 83.2 45 80.0
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 3.3e-14 83.2 45 80.0
Gohir.D13G107450 Gossypium hirsutum HOM05D003957 ORTHO05D004833 5.7e-14 82.4 111 49.5
Lalb_Chr01g0000371 Lupinus albus HOM05D003957 ORTHO05D004833 7.4e-14 82.0 115 46.1
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 9.7e-14 81.6 67 59.7
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 1.3e-13 81.3 45 77.8
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 1.3e-13 81.3 45 77.8
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 1.3e-13 81.3 45 77.8
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.7e-13 80.9 45 77.8
Gorai.007G239900 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.7e-13 80.9 111 48.6
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.7e-13 80.9 90 47.8
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 2.8e-13 80.1 45 82.2
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 4.8e-13 79.3 45 86.7
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.4e-12 77.0 65 58.5
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 2.6e-11 73.6 39 82.1
TAR623G1764 Trochodendron aralioides HOM05D003957 ORTHO05D004833 2.2e-10 70.5 72 50.0
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 1.9e-09 67.4 45 66.7
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 2.5e-09 67.0 78 44.9
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 1.2e-08 64.7 45 66.7
Ah.00g001340 Amaranthus hybridus HOM05D003957 ORTHO05D004833 1.6e-08 64.3 96 43.8
Cfa010771 Carpinus fangiana HOM05D003957 ORTHO05D126305 2.7e-08 63.5 33 90.9
Gorai.009G400700 Gossypium raimondii HOM05D003957 ORTHO05D004833 4.7e-08 62.8 149 33.6
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.3e-07 60.5 91 41.8
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.3e-07 60.5 91 41.8
Gohir.D04G098500 Gossypium hirsutum HOM05D003957 ORTHO05D004833 2.3e-07 60.5 76 47.4
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 2.3e-07 60.5 45 57.8
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 2.0e-06 57.4 45 53.3


User provided reference genes

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