Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010780 Carpinus fangiana HOM05D003957 ORTHO05D004833 3.5e-82 308.1 146 100.0
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 1.9e-56 222.6 110 95.5
Cfa010787 Carpinus fangiana HOM05D003957 ORTHO05D004833 5.1e-49 198.0 137 75.2
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 3.9e-41 171.8 110 77.3
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 7.7e-37 157.5 108 72.2
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 1.9e-35 152.9 114 63.2
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 9.7e-32 140.6 114 59.6
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 2.8e-31 139.0 114 60.5
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 3.7e-31 138.7 110 63.6
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 1.4e-30 136.7 111 64.9
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 3.1e-30 135.6 110 60.0
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 6.9e-30 134.4 110 60.9
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 6.9e-30 134.4 110 60.9
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 9.1e-30 134.0 108 58.3
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 1.2e-29 133.7 110 60.0
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 1.2e-29 133.7 113 56.6
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 3.4e-29 132.1 110 60.0
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 4.5e-29 131.7 110 60.0
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 7.7e-29 131.0 112 58.9
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 7.7e-29 131.0 109 59.6
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 1.0e-28 130.6 110 60.0
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 1.7e-28 129.8 109 59.6
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 2.9e-28 129.0 111 59.5
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 6.5e-28 127.9 111 61.3
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 1.1e-27 127.1 110 60.0
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 2.5e-27 125.9 111 55.9
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 4.2e-27 125.2 113 54.9
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 5.5e-27 124.8 110 59.1
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 1.6e-26 123.2 107 57.9
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 1.6e-26 123.2 110 59.1
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 1.6e-26 123.2 110 55.5
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 1.6e-26 123.2 110 56.4
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 2.7e-26 122.5 110 55.5
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 6.1e-26 121.3 109 55.0
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 6.1e-26 121.3 110 54.5
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 2.3e-25 119.4 86 67.4
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 2.3e-25 119.4 131 48.9
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 3.0e-25 119.0 106 54.7
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 3.0e-25 119.0 117 57.3
Lalb_Chr01g0000371 Lupinus albus HOM05D003957 ORTHO05D004833 3.9e-25 118.6 116 56.0
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 3.9e-25 118.6 110 53.6
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 3.9e-25 118.6 115 55.7
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 1.1e-24 117.1 110 52.7
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 1.1e-24 117.1 110 52.7
CSS0008275 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.5e-24 116.7 111 54.1
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 1.5e-24 116.7 110 53.6
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 2.0e-24 116.3 112 51.8
Gohir.D13G107450 Gossypium hirsutum HOM05D003957 ORTHO05D004833 2.0e-24 116.3 112 57.1
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 2.0e-24 116.3 110 50.9
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 2.6e-24 115.9 112 60.7
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 2.6e-24 115.9 87 63.2
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 4.4e-24 115.2 115 53.9
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 1.3e-23 113.6 104 58.7
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.7e-23 113.2 111 56.8
Gorai.007G239900 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.7e-23 113.2 112 56.2
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 2.8e-23 112.5 108 51.9
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 4.8e-23 111.7 74 67.6
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 6.3e-23 111.3 108 51.9
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 8.2e-23 110.9 108 50.9
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 5.3e-22 108.2 104 53.8
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 7.0e-22 107.8 100 55.0
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 1.2e-21 107.1 115 46.1
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 2.0e-21 106.3 109 49.5
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 5.9e-21 104.8 54 87.0
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 7.7e-21 104.4 54 87.0
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.0e-20 104.0 56 83.9
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.0e-20 104.0 56 83.9
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 1.7e-20 103.2 54 85.2
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 1.7e-20 103.2 54 85.2
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 2.2e-20 102.8 104 55.8
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 2.2e-20 102.8 56 82.1
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 2.9e-20 102.4 54 85.2
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 5.0e-20 101.7 115 47.0
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 5.0e-20 101.7 66 71.2
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 6.5e-20 101.3 54 85.2
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 8.5e-20 100.9 110 47.3
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 8.5e-20 100.9 106 48.1
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.1e-19 100.5 104 54.8
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 1.4e-19 100.1 54 81.5
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 1.9e-19 99.8 74 63.5
Gohir.D04G098500 Gossypium hirsutum HOM05D003957 ORTHO05D004833 2.5e-19 99.4 78 62.8
Gorai.009G400700 Gossypium raimondii HOM05D003957 ORTHO05D004833 4.2e-19 98.6 94 54.3
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 5.5e-19 98.2 50 84.0
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 7.2e-19 97.8 49 87.8
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 9.4e-19 97.4 54 83.3
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.6e-18 96.7 104 52.9
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 1.6e-18 96.7 54 83.3
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 1.6e-18 96.7 49 87.8
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 2.1e-18 96.3 55 78.2
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 2.1e-18 96.3 49 85.7
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 4.7e-18 95.1 54 79.6
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 6.1e-18 94.7 96 47.9
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 8.0e-18 94.4 49 85.7
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 8.0e-18 94.4 55 78.2
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 8.0e-18 94.4 54 81.5
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 8.0e-18 94.4 73 61.6
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.0e-17 94.0 53 79.2
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 1.0e-17 94.0 53 79.2
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 1.0e-17 94.0 53 79.2
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.4e-17 93.6 53 79.2
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.4e-17 93.6 54 79.6
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 1.4e-17 93.6 54 79.6
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 1.8e-17 93.2 54 79.6
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 1.8e-17 93.2 52 80.8
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 2.3e-17 92.8 53 77.4
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 2.3e-17 92.8 53 79.2
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 3.0e-17 92.4 53 77.4
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 3.0e-17 92.4 53 77.4
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 3.0e-17 92.4 53 77.4
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.9e-17 92.0 54 79.6
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 5.2e-17 91.7 49 85.7
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 5.2e-17 91.7 56 73.2
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 5.2e-17 91.7 48 85.4
Ah.00g001340 Amaranthus hybridus HOM05D003957 ORTHO05D004833 6.7e-17 91.3 106 50.0
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 8.8e-17 90.9 54 75.9
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 8.8e-17 90.9 53 75.5
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 1.1e-16 90.5 53 77.4
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 1.5e-16 90.1 50 76.0
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 2.0e-16 89.7 54 75.9
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.6e-16 89.4 53 75.5
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 2.6e-16 89.4 49 79.6
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 4.4e-16 88.6 52 71.2
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 4.4e-16 88.6 54 75.9
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 5.7e-16 88.2 49 75.5
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 5.7e-16 88.2 64 59.4
Haze_03193 Corylus avellana HOM05D000309 ORTHO05D000008 7.4e-16 87.8 62 72.6
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 9.7e-16 87.4 49 77.6
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.7e-15 86.7 49 77.6
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 2.2e-15 86.3 49 73.5
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 2.2e-15 86.3 49 73.5
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 2.2e-15 86.3 49 73.5
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 2.2e-15 86.3 49 73.5
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 2.2e-15 86.3 49 73.5
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 2.2e-15 86.3 75 52.0
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 6.3e-15 84.7 72 56.9
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.1e-14 84.0 49 71.4
Sopen01g034450 Solanum pennellii HOM05D003957 ORTHO05D030633 3.1e-14 82.4 54 70.4
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 1.6e-13 80.1 58 63.8
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.0e-13 79.7 49 71.4
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 2.0e-13 79.7 54 68.5
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 2.6e-13 79.3 65 60.0
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 2.6e-13 79.3 54 68.5
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 3.5e-13 79.0 43 81.4
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 4.5e-13 78.6 54 66.7
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 3.8e-12 75.5 39 84.6
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 1.1e-11 73.9 43 79.1
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 1.5e-11 73.6 43 76.7
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 5.5e-11 71.6 40 77.5
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 5.5e-11 71.6 40 77.5
TAR623G1764 Trochodendron aralioides HOM05D003957 ORTHO05D004833 5.5e-11 71.6 76 50.0
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 5.2e-09 65.1 46 60.9
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 4.4e-08 62.0 43 55.8
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 3.1e-06 55.8 41 56.1


User provided reference genes

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