Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1413.3 710 100.0
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1261.1 1043 67.6
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1241.1 852 77.2
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1208.7 908 70.9
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1143.3 850 70.4
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1130.5 844 71.3
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1127.5 852 70.1
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1122.1 849 70.4
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1118.6 851 70.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1117.8 851 70.0
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1117.1 852 69.5
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1115.1 850 69.2
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1110.5 851 69.7
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1110.1 849 70.0
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1110.1 850 68.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1109.4 852 69.1
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1108.6 849 69.7
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1108.2 858 69.5
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1107.8 851 69.4
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1107.4 852 68.9
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1105.5 858 69.3
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1104.4 858 69.5
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1103.2 852 68.7
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1102.4 851 69.2
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1102.0 850 68.4
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1101.7 869 67.8
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1101.7 750 75.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1101.3 853 69.2
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1101.3 852 68.4
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1101.3 849 69.5
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1099.3 853 68.6
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1097.8 856 68.8
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1096.3 852 69.5
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1095.5 858 69.0
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1094.3 853 68.7
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1094.3 854 68.3
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1091.6 852 68.4
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1090.5 849 68.6
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1088.9 844 68.4
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1088.6 898 64.8
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1088.6 852 67.8
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1085.9 852 68.5
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1085.9 852 67.7
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1082.0 867 67.1
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1080.5 852 67.0
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1080.1 851 68.4
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1079.7 916 64.0
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1075.8 854 66.9
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 1.5e-311 1072.4 851 67.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 2.8e-310 1068.1 874 66.0
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 6.3e-310 1067.0 757 72.4
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 6.3e-310 1067.0 852 66.7
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 1.1e-309 1066.2 852 67.1
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 1.3e-307 1059.3 851 66.5
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 8.5e-307 1056.6 868 65.3
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 3.2e-306 1054.7 849 67.4
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 4.2e-306 1054.3 930 62.8
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 2.7e-305 1051.6 851 66.3
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 3.6e-305 1051.2 848 65.7
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 5.1e-304 1047.3 851 65.7
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 9.7e-303 1043.1 868 64.6
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.8e-301 1038.9 868 64.5
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 3.1e-301 1038.1 868 64.5
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 4.1e-301 1037.7 853 65.8
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 6.9e-301 1036.9 855 65.4
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 7.7e-300 1033.5 851 64.5
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 7.7e-300 1033.5 855 64.4
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 5.5e-298 1027.3 851 64.9
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 4.7e-297 1024.2 865 63.1
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 2.8e-294 1015.0 867 63.2
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 2.8e-294 1015.0 867 63.2
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 2.8e-294 1015.0 867 63.2
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.4e-293 1011.9 927 60.3
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 3.1e-293 1011.5 867 63.1
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 5.3e-293 1010.7 867 62.9
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 5.3e-293 1010.7 867 62.9
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 3.5e-292 1008.1 867 63.0
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 5.9e-292 1007.3 927 60.0
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 1.0e-291 1006.5 867 62.5
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 3.2e-290 1001.5 868 62.9
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 1.2e-289 999.6 881 62.7
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 6.1e-289 997.3 868 62.9
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 8.0e-289 996.9 867 62.1
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 1.0e-288 996.5 956 58.3
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.8e-288 995.7 854 62.9
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 3.3e-287 991.5 849 62.4
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 3.7e-286 988.0 854 62.5
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 8.5e-283 976.9 794 65.4
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 1.0e-280 969.9 768 67.6
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 5.4e-277 957.6 845 59.8
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 7.0e-277 957.2 864 59.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.1e-269 931.8 763 68.3
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 2.7e-268 928.7 848 59.7
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 2.8e-257 892.1 733 64.8
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 6.0e-236 821.2 850 51.1
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 3.3e-234 815.5 885 52.0
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 4.2e-229 798.5 842 50.6
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.3e-214 750.4 847 47.3
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 4.5e-207 725.3 735 56.6
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-198 697.2 696 58.5
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.6e-191 672.9 582 61.3
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 5.3e-184 648.7 469 73.8
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.6e-183 646.4 465 71.4
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 7.9e-180 634.8 433 76.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.9e-179 632.5 735 52.1
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.4e-176 624.0 581 57.8
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 4.2e-165 585.9 819 40.5
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.0e-155 553.1 358 81.0
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 3.8e-150 536.2 642 51.6
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 5.2e-147 525.8 341 79.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.3e-145 521.2 479 58.5
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 6.6e-118 429.1 413 56.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 8.7e-110 402.1 334 67.1
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 3.4e-106 390.2 461 51.8
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 8.1e-100 369.0 860 32.1
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.8e-99 367.9 269 67.7
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.1e-93 348.6 282 64.2
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 6.9e-91 339.3 826 30.6
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.5e-87 327.0 342 54.4
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.9e-86 323.6 332 50.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 9.4e-80 302.4 159 91.2
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.2e-79 302.0 1009 27.1
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.2e-72 276.9 249 55.0
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 7.9e-71 272.7 245 57.1
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 8.8e-70 269.2 160 77.5
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.7e-69 266.5 295 49.8
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.5e-40 172.2 120 72.5
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 4.9e-36 157.1 96 82.3
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 7.0e-35 153.3 94 80.9
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 2.9e-33 147.9 99 72.7
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.1e-32 146.0 165 52.7
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-31 142.5 91 76.9
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-28 132.5 67 88.1
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-24 119.0 72 79.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.2e-21 109.4 99 59.6
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.9e-20 104.8 113 51.3
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.7e-20 104.4 88 67.0
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 3.2e-19 101.3 82 68.3
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.2e-19 101.3 59 88.1
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 5.4e-19 100.5 87 60.9
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.0e-17 96.3 54 92.6
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 3.9e-17 94.4 77 66.2
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 5.1e-17 94.0 82 62.2
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-16 92.8 57 75.4
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 7.5e-13 80.1 49 81.6
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-12 79.0 70 61.4
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.9e-11 75.5 37 97.3
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 2.4e-11 75.1 88 50.0
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 2.4e-11 75.1 88 50.0
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 4.1e-11 74.3 61 65.6
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 6.0e-10 70.5 42 73.8
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-09 69.7 42 71.4
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 3.9e-09 67.8 85 50.6
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 5.1e-09 67.4 43 79.1
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 6.8e-06 57.0 34 79.4


User provided reference genes

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