Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 1.9e-130 469.2 233 100.0
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 5.4e-93 344.7 200 87.0
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.5e-87 326.6 204 79.9
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 8.6e-83 310.8 211 75.8
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 2.8e-81 305.8 207 73.9
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 2.9e-78 295.8 203 73.9
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.1e-77 293.9 208 72.1
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.1e-77 293.9 206 72.3
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.1e-77 293.9 206 73.3
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 1.2e-76 290.4 207 72.9
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 6.0e-76 288.1 207 73.4
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.0e-75 287.3 208 74.0
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.3e-75 287.0 207 71.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 1.3e-75 287.0 207 73.4
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.7e-75 286.6 209 71.8
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.0e-75 285.8 204 70.1
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 3.9e-75 285.4 204 71.1
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 8.6e-75 284.3 206 71.4
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.3e-74 282.3 207 73.4
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.3e-74 282.0 207 72.5
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 4.3e-74 282.0 205 72.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.6e-74 281.6 206 73.8
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 7.3e-74 281.2 206 69.9
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 9.6e-74 280.8 204 69.1
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-73 280.4 207 72.0
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 4.7e-73 278.5 207 69.6
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.7e-73 278.5 204 68.1
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.2e-73 278.1 214 67.8
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 8.1e-73 277.7 205 68.8
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.4e-72 276.9 206 68.4
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.4e-72 276.9 204 68.1
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.2e-72 275.0 204 68.1
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.0e-71 273.1 203 69.0
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 2.6e-71 272.7 211 66.4
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 3.4e-71 272.3 211 65.9
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 7.6e-71 271.2 214 67.8
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 9.9e-71 270.8 203 68.0
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 9.9e-71 270.8 203 68.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.3e-70 270.4 209 68.4
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 8.4e-70 267.7 209 67.9
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 3.2e-69 265.8 206 67.0
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.2e-68 263.8 211 64.0
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.7e-68 262.7 204 67.2
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 4.6e-68 261.9 203 69.0
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 6.0e-68 261.5 200 66.5
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 1.0e-67 260.8 203 65.5
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.6e-67 258.1 214 63.6
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 6.6e-67 258.1 203 66.0
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.5e-66 256.9 210 64.8
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.5e-66 256.1 203 65.5
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.3e-66 255.8 205 65.4
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 3.3e-66 255.8 206 62.6
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 4.3e-66 255.4 203 64.0
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 9.6e-66 254.2 202 63.4
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.3e-65 253.8 208 65.4
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.3e-65 253.8 204 65.2
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.6e-65 253.4 208 64.9
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.1e-65 253.1 203 65.0
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 2.8e-65 252.7 220 58.2
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 3.6e-65 252.3 203 64.5
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 3.6e-65 252.3 203 63.5
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.1e-64 250.8 201 65.7
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.1e-64 250.8 200 65.0
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.4e-64 250.4 200 64.0
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.4e-64 250.4 200 64.0
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.0e-64 248.8 209 62.7
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 6.9e-64 248.1 205 62.0
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.2e-63 247.3 205 63.9
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.2e-63 247.3 204 61.8
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.2e-63 247.3 247 55.5
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 1.5e-63 246.9 200 64.5
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.5e-63 246.9 212 61.8
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 2.6e-63 246.1 214 62.1
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 4.5e-63 245.4 200 64.0
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 7.6e-63 244.6 209 59.8
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 1.3e-62 243.8 200 64.0
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.3e-62 243.8 208 62.5
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.7e-62 243.4 207 59.9
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.9e-62 241.9 240 54.2
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 8.4e-62 241.1 200 62.0
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 4.2e-61 238.8 201 61.7
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 9.3e-61 237.7 228 54.8
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 9.3e-61 237.7 184 67.9
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 2.7e-60 236.1 208 61.1
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 6.7e-59 231.5 160 70.0
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.8e-57 226.1 207 58.5
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 5.3e-56 221.9 185 62.7
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 9.0e-56 221.1 197 58.9
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 6.4e-54 214.9 207 58.0
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 4.6e-52 208.8 208 56.7
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.0e-51 207.6 197 57.9
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.3e-51 207.2 186 58.1
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.3e-51 207.2 204 56.4
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 3.0e-51 206.1 122 80.3
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 6.7e-51 204.9 239 51.0
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.1e-49 199.9 208 55.8
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 4.8e-49 198.7 186 56.5
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 4.0e-48 195.7 210 51.9
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 4.0e-48 195.7 203 56.7
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 5.3e-48 195.3 205 55.6
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 5.8e-47 191.8 155 69.7
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.6e-47 191.4 201 54.7
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.3e-46 190.7 155 71.0
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.7e-46 190.3 207 54.6
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 5.5e-45 185.3 119 71.4
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 3.5e-44 182.6 96 82.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 2.3e-43 179.9 211 46.9
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.1e-42 177.6 179 53.1
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.7e-42 175.3 178 55.1
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 7.4e-42 174.9 214 46.7
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.4e-40 170.6 205 49.8
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.0e-38 164.5 148 61.5
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.9e-38 162.9 160 60.0
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.2e-36 157.5 172 54.7
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 3.6e-36 156.0 211 42.2
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 6.7e-35 151.8 146 56.2
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 6.7e-35 151.8 203 46.8
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 4.5e-31 139.0 95 73.7
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 9.7e-26 121.3 70 84.3
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 7.7e-23 111.7 57 84.2
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 5.0e-22 109.0 164 42.1
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 6.1e-20 102.1 67 64.2
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.4e-19 100.9 148 43.2
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 2.2e-17 93.6 69 62.3
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.1e-16 89.4 49 79.6
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 4.5e-15 85.9 50 68.0
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.3e-14 84.3 55 74.5
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.5e-13 80.9 58 70.7
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.2e-12 77.8 48 79.2
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.7e-12 76.6 48 79.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.6e-12 76.3 48 79.2
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 8.0e-12 75.1 48 77.1
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 8.0e-12 75.1 48 75.0
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.5e-10 68.6 43 76.7
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.7e-09 67.4 43 76.7
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 3.1e-08 63.2 33 90.9
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 1.6e-07 60.8 29 89.7


User provided reference genes

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