Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 0.0e+00 1498.4 737 100.0
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 0.0e+00 1305.8 853 79.1
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 9.4e-293 1010.0 739 71.4
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 6.1e-292 1007.3 739 71.2
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 2.4e-256 889.0 587 77.0
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 7.1e-240 834.3 729 61.2
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.0e-238 830.5 750 60.1
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.6e-234 815.8 738 59.3
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 5.4e-232 808.1 733 59.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.2e-226 790.4 742 57.3
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 7.6e-226 787.7 745 58.5
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 7.1e-224 781.2 745 58.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.6e-223 778.5 746 57.8
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 6.7e-222 774.6 746 56.6
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.3e-221 771.9 747 56.8
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.1e-220 769.6 736 56.9
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.7e-220 768.8 737 56.2
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.0e-219 764.2 737 57.8
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.2e-218 763.8 741 56.5
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.2e-218 763.8 748 54.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.0e-218 763.1 739 55.1
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.2e-217 759.6 746 55.9
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.9e-217 758.4 720 56.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 7.1e-216 754.6 737 55.5
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.3e-214 749.6 747 55.4
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 6.7e-214 748.0 739 56.0
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 8.7e-214 747.7 738 55.6
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.5e-210 736.9 734 54.2
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 3.0e-206 722.6 731 55.5
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.1e-205 720.7 755 52.5
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 4.8e-204 715.3 708 55.1
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.1e-203 714.1 725 54.9
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.1e-203 712.6 739 52.5
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 3.1e-203 712.6 739 52.5
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.5e-202 710.3 734 54.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 2.2e-201 706.4 723 55.6
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.9e-201 706.1 760 53.3
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 6.5e-201 704.9 699 57.8
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 8.5e-201 704.5 754 53.1
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.1e-197 694.1 736 51.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.0e-197 693.3 756 52.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.0e-197 693.3 743 52.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 5.9e-194 681.8 735 53.9
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.3e-193 680.6 727 50.9
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 5.0e-193 678.7 744 51.3
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.8e-190 670.2 622 57.7
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.1e-189 667.5 722 52.9
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.0e-189 666.8 736 50.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 4.0e-182 642.5 726 50.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.7e-178 629.8 716 49.4
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 4.5e-178 629.0 717 49.2
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.0e-177 627.9 723 48.5
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.9e-177 626.3 721 50.1
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 5.0e-177 625.5 718 48.3
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 7.2e-176 621.7 718 49.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.0e-174 617.8 750 48.7
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 4.0e-174 615.9 528 62.7
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 6.8e-174 615.1 720 48.8
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 1.2e-173 614.4 720 48.5
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 8.3e-172 608.2 710 48.0
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.4e-171 606.7 738 46.6
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 5.4e-171 605.5 724 46.8
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 7.0e-171 605.1 728 46.7
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.2e-170 604.4 734 46.9
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.0e-169 601.3 764 46.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.9e-169 599.7 727 47.3
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.5e-168 597.4 724 47.0
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 3.6e-167 592.8 729 47.3
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 3.6e-167 592.8 727 46.6
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.0e-166 589.7 729 45.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 4.4e-165 585.9 724 46.5
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.4e-165 585.9 566 57.4
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.9e-164 582.4 564 56.6
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.6e-157 560.1 736 44.3
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 7.5e-157 558.5 734 45.6
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.3e-156 557.8 719 45.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 8.3e-156 555.1 724 44.3
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.9e-155 553.9 741 43.2
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 4.1e-155 552.7 737 44.6
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.2e-154 551.2 732 44.0
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 5.0e-153 545.8 732 42.9
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.6e-153 545.0 687 48.3
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 8.6e-153 545.0 716 44.4
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 5.6e-152 542.3 723 45.0
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 6.8e-150 535.4 434 62.2
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.5e-149 534.3 728 44.0
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.0e-149 533.9 719 45.5
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.4e-149 533.1 737 43.6
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 4.4e-149 532.7 717 42.8
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 7.5e-149 531.9 704 45.9
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.9e-145 519.6 722 43.4
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.1e-138 497.3 722 41.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 4.3e-136 489.6 437 55.6
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 9.6e-136 488.4 723 43.0
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 9.9e-133 478.4 482 56.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 4.9e-132 476.1 732 41.1
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 8.4e-132 475.3 733 40.7
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.9e-131 474.2 736 41.3
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.1e-131 472.2 726 40.2
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.6e-130 471.1 741 40.2
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 7.8e-130 468.8 504 52.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.7e-129 467.6 731 40.4
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.1e-127 460.7 731 40.5
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 8.1e-127 458.8 693 40.7
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 3.1e-126 456.8 710 40.3
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.4e-125 453.0 583 45.1
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.0e-122 442.6 430 55.6
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-121 440.7 707 40.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.5e-120 437.2 701 38.7
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.6e-119 434.5 747 37.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.1e-114 417.5 515 47.6
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 3.5e-114 416.8 371 61.7
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.1e-107 395.2 727 37.6
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.2e-107 393.3 736 36.3
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 2.7e-106 390.6 587 40.9
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.5e-104 384.0 497 46.1
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.1e-103 380.9 736 36.0
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.7e-103 380.2 416 51.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.3e-95 355.1 611 36.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 8.8e-89 332.4 306 57.2
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 7.7e-85 319.3 376 45.7
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.3e-81 307.8 399 45.9
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.2e-75 287.3 558 35.3
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 5.9e-69 266.5 742 28.7
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 4.7e-66 256.9 815 28.8
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.8e-63 247.7 398 40.5
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.0e-60 236.9 164 68.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.4e-56 224.2 639 28.0
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.1e-50 204.9 129 75.2
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 4.0e-49 200.7 142 64.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.4e-46 191.4 106 81.1
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 7.0e-46 189.9 243 45.7
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-43 182.6 106 79.2
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.3e-43 180.6 277 36.8
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 5.6e-43 180.3 208 45.7
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.0e-40 171.8 248 40.7
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.9e-38 165.2 262 41.2
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 3.2e-38 164.5 503 30.2
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-36 158.7 770 23.5
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 8.6e-36 156.4 516 26.7
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.6e-27 127.1 114 56.1
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.8e-26 124.8 205 37.1
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 7.6e-24 116.7 148 39.2
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.1e-21 108.6 340 30.0
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.7e-20 105.5 198 32.3
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.9e-16 89.7 201 30.8
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 8.4e-15 86.7 174 35.1
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 4.2e-14 84.3 57 70.2
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 9.3e-14 83.2 66 59.1
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 2.1e-13 82.0 58 63.8
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 6.0e-13 80.5 147 35.4
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.8e-13 80.1 240 29.6
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 1.0e-12 79.7 62 56.5
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.3e-12 79.3 57 66.7
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.0e-12 78.2 329 25.2
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.3e-10 72.8 65 58.5
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.6e-10 71.2 232 30.6
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.8e-09 68.9 191 29.3
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.4e-09 68.6 76 47.4
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 3.1e-09 68.2 113 31.9
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.3e-07 62.8 150 33.3
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.9e-07 61.6 78 39.7
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 4.2e-06 57.8 51 47.1
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 9.3e-06 56.6 41 53.7


User provided reference genes

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