Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 4.9e-182 641.0 313 100.0
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 6.2e-44 182.2 259 46.3
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 6.4e-41 172.2 182 55.5
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 9.6e-37 158.3 222 46.4
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 9.6e-37 158.3 222 46.4
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 1.3e-36 157.9 241 43.2
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 1.3e-36 157.9 95 82.1
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 1.6e-36 157.5 222 45.9
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 2.1e-36 157.1 83 92.8
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 2.1e-36 157.1 138 65.9
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 3.7e-36 156.4 83 92.8
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 4.8e-36 156.0 222 45.5
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 4.8e-36 156.0 222 45.5
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 4.8e-36 156.0 83 91.6
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 4.8e-36 156.0 222 45.5
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 6.2e-36 155.6 222 45.5
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 8.1e-36 155.2 222 45.0
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 8.1e-36 155.2 83 91.6
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 1.1e-35 154.8 222 45.5
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 1.1e-35 154.8 83 91.6
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 1.4e-35 154.5 95 80.0
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 1.8e-35 154.1 83 90.4
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 1.8e-35 154.1 83 91.6
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 2.4e-35 153.7 83 89.2
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 2.4e-35 153.7 222 45.0
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 2.4e-35 153.7 222 45.0
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 2.4e-35 153.7 83 90.4
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 3.1e-35 153.3 222 45.0
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 3.1e-35 153.3 83 90.4
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 3.1e-35 153.3 222 44.6
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 3.1e-35 153.3 83 89.2
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 4.0e-35 152.9 83 88.0
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 4.0e-35 152.9 222 45.0
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 4.0e-35 152.9 83 89.2
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 4.0e-35 152.9 222 44.6
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 5.3e-35 152.5 83 89.2
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 6.9e-35 152.1 222 44.6
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 6.9e-35 152.1 83 90.4
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 6.9e-35 152.1 83 90.4
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 9.0e-35 151.8 222 44.6
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 1.2e-34 151.4 83 89.2
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.2e-34 151.4 83 89.2
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.2e-34 151.4 83 89.2
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.2e-34 151.4 83 89.2
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.2e-34 151.4 83 89.2
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 1.2e-34 151.4 95 81.1
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 1.2e-34 151.4 83 89.2
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 1.2e-34 151.4 83 88.0
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 1.2e-34 151.4 83 89.2
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 1.5e-34 151.0 83 89.2
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 1.5e-34 151.0 83 89.2
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 1.5e-34 151.0 83 88.0
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 2.0e-34 150.6 83 86.7
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 2.0e-34 150.6 222 44.6
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 2.0e-34 150.6 83 88.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 2.0e-34 150.6 83 88.0
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 2.6e-34 150.2 83 89.2
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 2.6e-34 150.2 222 43.7
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 2.6e-34 150.2 83 88.0
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 2.6e-34 150.2 83 88.0
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 3.4e-34 149.8 83 86.7
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 3.4e-34 149.8 83 89.2
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 3.4e-34 149.8 83 88.0
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 3.4e-34 149.8 83 89.2
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 4.5e-34 149.4 83 86.7
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 4.5e-34 149.4 222 44.1
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.8e-34 149.1 83 86.7
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.8e-34 149.1 83 86.7
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 5.8e-34 149.1 83 88.0
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 7.6e-34 148.7 222 44.1
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 7.6e-34 148.7 222 44.1
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 7.6e-34 148.7 222 44.1
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 7.6e-34 148.7 83 88.0
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 1.0e-33 148.3 222 43.2
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 1.7e-33 147.5 83 86.7
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 2.9e-33 146.7 83 86.7
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 2.9e-33 146.7 83 88.0
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.9e-33 146.0 83 84.3
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.9e-33 146.0 83 84.3
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 4.9e-33 146.0 83 84.3
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 4.9e-33 146.0 83 84.3
Cfa005722 Carpinus fangiana HOM05D003924 ORTHO05D043563 8.4e-33 145.2 143 60.8
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 8.4e-33 145.2 95 74.7
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 8.4e-33 145.2 83 88.0
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 1.1e-32 144.8 83 86.7
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-32 144.8 219 42.9
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.4e-32 144.4 222 42.8
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.5e-32 143.7 83 84.3
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 3.2e-32 143.3 83 79.5
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 3.2e-32 143.3 83 79.5
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 3.2e-32 143.3 83 79.5
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 4.2e-32 142.9 83 83.1
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.2e-32 142.9 83 85.5
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 5.5e-32 142.5 83 80.7
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 5.5e-32 142.5 83 79.5
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 5.5e-32 142.5 83 78.3
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 5.5e-32 142.5 83 78.3
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 7.1e-32 142.1 83 80.7
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 9.3e-32 141.7 93 73.1
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 9.3e-32 141.7 83 81.9
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 1.6e-31 141.0 83 79.5
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-31 141.0 85 80.0
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-31 141.0 85 80.0
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.1e-31 140.6 83 79.5
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 2.1e-31 140.6 83 79.5
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 2.1e-31 140.6 83 79.5
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 2.1e-31 140.6 93 71.0
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 2.1e-31 140.6 83 80.7
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 2.7e-31 140.2 83 79.5
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 2.7e-31 140.2 83 79.5
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 3.5e-31 139.8 106 69.8
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 4.6e-31 139.4 83 79.5
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 1.3e-30 137.9 83 77.1
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 8.7e-30 135.2 83 73.5
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 1.1e-29 134.8 75 85.3
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 3.3e-29 133.3 94 73.4
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 3.1e-27 126.7 83 69.9
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.1e-27 126.7 83 74.7
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.9e-24 117.5 70 85.7
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.7e-23 113.6 65 89.2
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.8e-22 110.9 65 87.7
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 5.1e-22 109.4 101 60.4
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 6.3e-20 102.4 83 65.1
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 2.4e-19 100.5 217 34.1
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 5.3e-19 99.4 79 62.0
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 6.7e-14 82.4 60 75.0
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.1e-13 81.6 60 75.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 9.7e-13 78.6 188 36.2
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 1.7e-12 77.8 188 35.6
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 1.8e-11 74.3 101 45.5
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 1.8e-11 74.3 60 66.7
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 3.1e-11 73.6 60 66.7
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 6.9e-11 72.4 44 81.8
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 2.0e-10 70.9 60 60.0
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 2.6e-10 70.5 60 61.7
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.0e-09 68.6 76 51.3
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.0e-09 68.6 62 59.7
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 2.2e-09 67.4 76 50.0
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 2.2e-09 67.4 60 60.0
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 2.2e-09 67.4 87 41.4
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 2.9e-09 67.0 44 72.7
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 6.5e-09 65.9 62 58.1
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 8.5e-09 65.5 44 70.5
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 8.5e-09 65.5 60 60.0
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 1.4e-08 64.7 62 54.8
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 1.4e-08 64.7 62 54.8
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 1.4e-08 64.7 59 61.0
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 1.9e-08 64.3 44 68.2
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 1.9e-08 64.3 44 72.7
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 1.9e-08 64.3 44 70.5
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 2.5e-08 63.9 61 54.1
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 4.2e-08 63.2 60 55.0
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.2e-07 61.6 60 51.7
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 1.2e-07 61.6 60 55.0
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 1.2e-07 61.6 60 55.0
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.6e-07 61.2 60 53.3
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.6e-07 61.2 57 54.4
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 2.1e-07 60.8 64 54.7
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.7e-07 60.5 60 50.0
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.7e-07 60.5 44 61.4
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 4.7e-07 59.7 44 63.6
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 4.7e-07 59.7 65 49.2
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 6.1e-07 59.3 103 40.8
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 7.9e-07 58.9 59 52.5
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 1.0e-06 58.5 44 63.6
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 1.0e-06 58.5 43 62.8
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 1.0e-06 58.5 57 52.6
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 1.8e-06 57.8 61 52.5
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 1.8e-06 57.8 59 52.5
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 2.3e-06 57.4 60 51.7
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 2.3e-06 57.4 60 51.7
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.3e-06 57.4 52 55.8
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.3e-06 57.4 32 87.5
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 2.3e-06 57.4 43 60.5
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 3.0e-06 57.0 62 48.4
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 3.0e-06 57.0 61 49.2
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.0e-06 57.0 90 41.1
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 3.9e-06 56.6 60 53.3
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 3.9e-06 56.6 39 66.7
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 3.9e-06 56.6 60 53.3
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 5.1e-06 56.2 60 48.3
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 5.1e-06 56.2 32 84.4
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 6.7e-06 55.8 61 52.5
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 8.8e-06 55.5 38 76.3
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 8.8e-06 55.5 39 64.1


User provided reference genes

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