Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 6.6e-293 1010.0 516 100.0
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 1.1e-276 956.1 509 95.3
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 6.0e-254 880.6 516 86.8
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 2.4e-250 868.6 515 86.0
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 2.9e-240 835.1 513 83.0
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 1.0e-237 826.6 495 83.6
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 2.0e-236 822.4 508 82.1
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 6.3e-235 817.4 508 80.7
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.4e-234 816.2 506 81.6
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 7.2e-231 803.9 491 81.9
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 9.4e-231 803.5 510 79.4
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 3.6e-230 801.6 509 77.4
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.0e-229 800.0 503 79.9
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 3.0e-229 798.5 497 79.1
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 2.6e-228 795.4 509 78.8
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 9.7e-228 793.5 494 79.8
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 3.7e-227 791.6 498 78.9
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 6.3e-227 790.8 508 78.3
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.1e-226 790.0 502 78.9
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 3.1e-226 788.5 496 79.4
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.1e-226 788.1 496 79.4
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 4.1e-226 788.1 503 78.9
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 9.1e-226 786.9 503 79.1
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.2e-225 786.6 496 79.4
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 1.2e-225 786.6 510 79.2
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.7e-224 782.7 502 77.1
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 2.2e-224 782.3 520 77.1
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 3.8e-224 781.6 502 76.7
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 6.5e-224 780.8 507 77.1
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 8.5e-224 780.4 498 77.5
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 5.5e-223 777.7 482 81.3
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 7.2e-223 777.3 526 75.3
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 7.2e-223 777.3 503 77.3
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 9.4e-223 776.9 512 77.7
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.2e-222 776.5 471 82.2
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 4.7e-222 774.6 505 76.6
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 1.4e-221 773.1 510 75.5
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 1.4e-221 773.1 507 76.9
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 2.3e-221 772.3 512 77.5
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.0e-221 771.9 492 79.9
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 3.0e-221 771.9 511 76.1
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 3.0e-221 771.9 507 77.1
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 8.8e-221 770.4 501 77.6
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.2e-220 770.0 512 77.0
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 5.7e-220 767.7 517 75.6
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 5.7e-220 767.7 511 76.9
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 7.5e-220 767.3 500 77.4
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.8e-219 765.4 508 77.4
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 4.8e-219 764.6 504 76.4
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 1.1e-218 763.5 500 77.4
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.8e-218 762.7 504 76.0
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.4e-218 762.3 507 76.7
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 3.1e-218 761.9 499 76.2
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.1e-218 761.9 497 77.1
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 5.3e-218 761.1 489 76.5
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.2e-217 760.0 510 73.9
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 1.7e-216 756.1 492 76.8
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 2.2e-216 755.7 494 75.9
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 2.1e-214 749.2 499 75.6
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 3.6e-214 748.4 509 75.4
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 6.1e-214 747.7 499 75.4
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 4.0e-213 745.0 501 75.6
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 4.0e-213 745.0 499 74.5
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 9.8e-212 740.3 495 74.9
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.2e-211 739.2 507 73.0
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 3.7e-211 738.4 505 74.7
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 4.8e-211 738.0 513 72.7
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 4.8e-211 738.0 515 72.4
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 1.4e-210 736.5 513 72.7
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 5.4e-210 734.6 501 74.9
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.6e-209 733.0 490 73.9
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 1.0e-208 730.3 511 73.0
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.0e-208 730.3 571 69.0
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 2.3e-208 729.2 501 74.3
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 2.5e-207 725.7 515 71.8
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 3.3e-207 725.3 498 74.9
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 7.2e-207 724.2 499 74.5
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.2e-206 723.4 493 74.4
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 2.8e-206 722.2 498 75.1
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 5.2e-205 718.0 506 72.7
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.5e-204 716.5 501 73.5
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 3.4e-204 715.3 491 74.7
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 9.8e-204 713.8 491 74.5
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 1.3e-203 713.4 501 74.1
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.2e-203 712.6 498 73.9
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 2.2e-203 712.6 491 74.5
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 1.4e-202 709.9 510 70.0
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 7.0e-202 707.6 490 73.3
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.7e-200 703.0 497 73.0
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 5.0e-200 701.4 438 79.9
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.1e-199 700.3 493 73.6
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.3e-199 698.7 473 74.2
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 8.0e-198 694.1 506 71.3
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 2.3e-197 692.6 490 70.6
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 7.8e-193 677.6 507 68.6
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.1e-181 640.6 625 56.5
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 2.9e-179 632.5 516 63.4
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.6e-177 625.2 388 79.1
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.6e-174 616.7 474 66.2
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 6.8e-173 611.3 466 68.9
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.4e-170 603.6 502 61.6
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 3.8e-163 578.9 501 59.9
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 3.2e-162 575.9 514 58.6
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.5e-151 539.7 340 81.5
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.1e-150 536.6 503 56.7
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 6.9e-141 505.0 375 73.3
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 3.8e-131 472.6 410 58.3
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 7.2e-114 415.2 564 44.5
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 2.7e-105 386.7 264 70.8
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 3.1e-101 373.2 263 71.9
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.3e-83 314.7 280 60.4
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-80 304.7 460 43.3
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.1e-80 303.5 370 48.9
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 2.1e-73 280.8 173 79.8
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 4.4e-71 273.1 189 68.8
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.1e-60 237.7 137 78.1
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 4.6e-60 236.5 155 73.5
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-58 231.5 150 78.0
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 5.2e-56 223.0 140 83.6
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 1.2e-55 221.9 244 48.0
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 6.0e-52 209.5 131 83.2
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 2.1e-44 184.5 121 71.9
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.7e-43 181.4 149 61.1
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.1e-41 174.5 156 59.0
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.9e-39 165.6 297 39.7
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 1.7e-38 164.9 133 69.2
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.9e-38 164.1 99 84.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.9e-38 164.1 99 84.8
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 6.7e-35 152.9 97 79.4
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.8e-33 147.5 174 48.9
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 9.0e-32 142.5 224 39.3
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 5.0e-22 110.2 121 52.9
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.5e-21 106.7 79 73.4
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 7.4e-18 96.3 62 72.6
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.3e-16 90.1 64 75.0
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 3.4e-15 87.4 138 40.6
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 3.8e-14 84.0 188 32.4
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.1e-13 82.4 50 80.0
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 3.9e-11 73.9 62 62.9
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.1e-08 65.9 72 50.0
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.9e-06 57.8 111 33.3
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 5.0e-06 57.0 111 31.5
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 6.5e-06 56.6 198 28.3


User provided reference genes

Program Settings