Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 2211.8 1097 100.0
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1941.0 1189 84.9
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1916.0 1097 86.8
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1906.0 1102 85.5
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1781.9 1101 80.2
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1758.0 1097 80.3
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1725.7 1097 78.6
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1721.4 1103 78.1
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1714.9 1104 77.6
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1711.8 1101 77.0
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1710.7 1099 78.2
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1705.6 1099 77.6
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1704.1 1097 77.4
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1697.9 1101 76.9
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1696.8 1117 76.0
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1690.6 1099 76.7
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1689.5 1101 76.1
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1681.8 1117 75.5
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1681.4 1096 77.8
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1680.2 1098 76.9
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1659.4 1102 75.8
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1653.6 1133 73.8
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1640.9 1098 75.8
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1628.2 1094 75.9
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1624.4 1100 74.5
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1624.0 1103 73.8
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1619.0 1102 74.0
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1616.3 1093 74.5
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1614.0 1099 73.3
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1608.6 1101 73.0
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1607.0 1151 72.0
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1605.9 1099 73.0
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1605.9 1103 73.0
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1603.2 1012 78.9
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1602.8 1098 73.4
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1600.1 1098 74.2
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1600.1 1093 73.7
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1599.3 1112 72.5
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1596.6 1099 73.4
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1590.9 1078 74.5
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1586.2 1096 72.1
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1585.9 1101 72.7
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1584.3 1149 69.7
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1580.8 1099 72.5
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1576.6 1093 71.5
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1575.5 1099 72.5
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1573.5 1099 72.7
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1572.8 1099 72.4
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1572.8 1099 72.5
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1567.7 1135 69.1
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1560.8 1107 71.8
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1558.5 1096 72.3
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1557.7 1093 71.3
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1556.2 1062 72.6
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1554.3 1099 71.9
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1549.3 1109 71.2
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1547.3 1128 69.3
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1546.2 1137 70.0
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1543.1 1034 74.2
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1528.8 1059 73.1
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1528.5 1092 69.9
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1528.1 1091 71.4
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1527.7 1094 72.5
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1520.8 1094 69.9
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1498.4 1105 68.2
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1489.6 1102 69.8
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1487.2 1181 64.4
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1487.2 1106 69.1
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1484.2 1090 69.2
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1483.0 1108 68.7
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1481.1 883 80.9
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1474.5 1101 68.1
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1471.4 1099 68.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1460.7 1220 62.5
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1454.5 1099 68.7
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1448.7 1098 68.3
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1439.1 871 80.4
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1438.3 1115 67.0
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1432.5 871 79.7
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1403.7 870 78.4
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1392.5 846 79.3
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1384.8 821 82.3
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1382.5 1099 63.5
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1370.5 859 77.2
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1349.3 1223 59.2
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1349.0 1002 70.0
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1345.5 1025 68.9
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1344.7 1096 63.2
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1338.9 870 75.5
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1336.2 874 75.4
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1315.1 940 70.5
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1313.9 829 75.9
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1310.8 1056 64.9
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1280.4 1103 61.8
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1250.0 1099 61.4
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1194.9 868 69.4
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1187.9 1074 58.8
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 0.0e+00 1135.6 700 79.6
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 4.7e-304 1048.1 906 60.2
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 9.1e-284 980.7 645 74.0
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.4e-270 935.3 608 75.8
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 9.2e-268 927.5 711 66.9
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 5.8e-262 908.3 1105 46.4
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 1.1e-260 904.0 1127 45.4
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.8e-248 862.8 978 47.4
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 6.9e-223 778.5 515 76.1
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 2.1e-219 766.9 539 73.1
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.2e-211 741.1 962 44.5
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 2.7e-171 607.1 472 66.9
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.4e-167 594.7 405 74.1
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 5.2e-146 523.1 411 67.9
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 6.6e-141 506.1 1085 33.6
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.1e-138 498.8 321 75.4
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.5e-124 451.8 389 57.8
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 2.4e-98 364.8 239 74.9
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 2.2e-83 315.1 297 56.6
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 5.0e-80 303.9 210 73.3
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.5e-79 300.4 225 70.2
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-74 285.4 233 65.2
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 1.6e-65 255.8 206 64.6
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 2.9e-64 251.5 160 76.9
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 3.6e-62 244.6 174 69.0
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-61 242.3 174 73.6
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 1.5e-55 222.6 205 61.5
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.9e-55 222.2 194 65.5
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 8.8e-53 213.4 174 64.9
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.0e-48 199.9 154 67.5
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 4.2e-47 194.5 144 68.1
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 1.5e-44 186.0 183 58.5
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 5.7e-44 184.1 177 59.9
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 2.4e-42 178.7 180 56.1
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 9.2e-42 176.8 176 52.8
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 8.6e-40 170.2 203 48.8
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 7.3e-39 167.2 162 54.9
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 5.2e-37 161.0 95 78.9
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 2.0e-33 149.1 95 80.0
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 5.2e-29 134.4 89 71.9
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.4e-28 131.3 104 58.7
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 4.4e-28 131.3 92 73.9
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 7.5e-28 130.6 143 52.4
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.7e-27 129.4 100 60.0
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 4.9e-27 127.9 90 68.9
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 2.1e-22 112.5 171 43.3
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 2.3e-21 109.0 99 54.5
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 6.8e-21 107.5 139 44.6
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 8.9e-21 107.1 536 23.7
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 1.3e-19 103.2 210 35.2
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 2.4e-18 99.0 318 26.1
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.2e-17 96.7 111 48.6
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.6e-17 96.3 343 28.9
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.5e-17 95.1 100 46.0
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 3.9e-16 91.7 73 63.0
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 7.3e-15 87.4 66 63.6
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 9.5e-15 87.0 81 58.0
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.2e-14 86.7 53 77.4
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 1.8e-13 82.8 82 58.5
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 3.1e-13 82.0 100 51.0
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.1e-13 82.0 52 75.0
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 8.9e-13 80.5 55 70.9
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 2.6e-12 79.0 55 70.9
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 9.9e-12 77.0 67 55.2
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.1e-10 70.9 41 78.0
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.2e-10 70.5 50 64.0
Actinidia08004 Actinidia chinensis HOM05D001849 ORTHO05D004689 1.6e-06 59.7 36 80.6
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 1.6e-06 59.7 92 43.5
SEGI_26020 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.6e-06 59.7 134 35.8
SMO164G0082 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 3.6e-06 58.5 175 32.6


User provided reference genes

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