Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 2.8e-310 1067.8 514 100.0
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.2e-276 956.1 523 89.5
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 1.6e-204 716.5 554 65.5
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.8e-192 676.4 533 64.9
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 5.0e-150 535.4 532 52.8
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 6.6e-142 508.4 571 49.0
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 4.3e-133 479.2 521 50.5
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.6e-132 477.2 466 53.6
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 1.1e-131 474.6 468 53.0
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 3.1e-131 473.0 554 47.3
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 3.9e-126 456.1 524 48.7
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 2.8e-124 449.9 556 46.6
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 2.4e-123 446.8 462 51.7
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 9.0e-123 444.9 508 47.8
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 2.6e-122 443.4 389 58.9
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.9e-121 439.1 466 49.1
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.4e-120 437.6 518 46.9
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 3.2e-120 436.4 510 47.5
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 7.1e-120 435.3 504 48.0
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 9.3e-120 434.9 569 44.8
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 4.6e-119 432.6 554 43.0
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 7.8e-119 431.8 514 47.3
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.5e-117 427.6 473 49.9
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.9e-117 427.2 524 44.1
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 2.5e-117 426.8 564 42.7
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 5.6e-117 425.6 477 48.4
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.3e-117 425.2 471 49.9
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 9.6e-117 424.9 507 45.4
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.6e-116 422.9 452 49.6
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.5e-114 417.5 508 45.7
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 5.8e-114 415.6 462 48.3
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 2.2e-113 413.7 537 44.9
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.8e-113 412.9 527 44.6
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 3.8e-113 412.9 516 45.3
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 4.2e-112 409.5 531 45.2
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 9.3e-112 408.3 466 47.6
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 9.3e-112 408.3 513 45.8
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.2e-111 407.9 558 42.8
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 9.6e-109 398.3 444 49.8
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.8e-107 394.0 532 42.9
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-106 391.3 517 42.9
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.2e-106 391.3 460 47.2
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.7e-105 387.5 381 52.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.2e-105 387.1 490 44.7
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 6.4e-105 385.6 517 43.1
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.4e-104 384.4 458 44.5
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.5e-104 383.6 483 45.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.6e-103 380.9 470 44.9
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 2.1e-103 380.6 585 40.2
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.7e-103 380.2 445 45.6
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 4.6e-103 379.4 487 44.1
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 6.7e-102 375.6 461 44.0
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-101 374.0 435 47.6
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 4.3e-101 372.9 469 44.8
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 2.1e-100 370.5 384 50.5
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 3.1e-99 366.7 381 50.9
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 4.0e-99 366.3 372 50.8
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 5.3e-99 365.9 372 51.3
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 6.9e-99 365.5 457 43.5
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.0e-99 365.2 447 47.2
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 2.0e-98 364.0 466 43.6
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.6e-98 363.6 447 47.0
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 5.8e-98 362.5 379 49.6
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.2e-97 360.5 507 42.2
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.2e-97 360.5 466 43.3
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.4e-96 357.8 393 48.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 2.1e-95 354.0 449 43.2
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 3.5e-95 353.2 387 46.5
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 2.4e-91 340.5 377 48.8
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.2e-90 338.2 319 53.6
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.5e-90 336.3 511 43.6
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 5.9e-90 335.9 535 40.0
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.7e-89 334.3 384 46.4
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.2e-88 330.1 390 46.4
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.6e-87 327.8 444 42.8
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.7e-87 327.0 517 40.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 7.9e-87 325.5 471 40.1
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 8.8e-86 322.0 506 39.5
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.1e-85 321.6 381 45.4
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.1e-83 315.1 510 38.4
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.4e-83 313.9 510 38.2
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 3.1e-83 313.5 381 46.7
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 4.1e-83 313.2 446 40.8
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.2e-82 311.6 446 40.8
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 4.5e-82 309.7 446 40.8
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 5.0e-81 306.2 521 37.2
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 6.5e-81 305.8 394 44.7
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 8.5e-81 305.4 409 42.8
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.9e-80 304.3 443 40.0
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 2.5e-80 303.9 469 39.2
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 3.2e-80 303.5 469 39.0
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 4.2e-80 303.1 469 39.2
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 5.5e-80 302.8 449 41.0
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 1.6e-79 301.2 450 40.0
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.6e-79 300.1 497 39.2
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 5.1e-78 296.2 438 40.2
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 5.1e-78 296.2 422 40.8
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 7.4e-77 292.4 492 36.8
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 3.7e-76 290.0 292 53.1
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 4.8e-76 289.7 494 36.8
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 7.7e-74 282.3 440 40.0
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 7.7e-74 282.3 433 39.7
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 7.2e-72 275.8 382 40.8
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.4e-70 271.6 303 48.8
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 6.3e-68 262.7 316 47.5
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 4.5e-66 256.5 336 44.9
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 1.0e-65 255.4 298 47.3
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.9e-64 251.1 387 40.1
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 4.2e-64 250.0 546 33.3
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 3.6e-63 246.9 295 46.4
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 1.5e-61 241.5 409 37.7
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.0e-61 241.1 278 47.1
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 2.2e-57 227.6 156 69.2
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.1e-56 225.3 512 33.4
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.1e-56 225.3 246 49.2
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 1.4e-54 218.4 233 51.5
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-50 204.9 282 42.6
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.7e-49 201.4 354 36.2
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.0e-49 199.9 367 36.5
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.4e-46 191.8 324 38.6
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 8.9e-46 189.1 397 31.7
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 5.7e-45 186.4 391 34.0
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 9.8e-45 185.7 268 44.0
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.8e-43 181.4 148 58.8
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.0e-42 177.9 242 41.7
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.0e-41 175.6 332 35.2
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 3.3e-40 170.6 217 41.9
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 3.6e-39 167.2 144 54.9
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.0e-38 165.6 555 28.1
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 5.2e-38 163.3 152 53.3
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.6e-37 161.0 554 28.3
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-34 151.8 282 35.8
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 2.0e-34 151.4 102 66.7
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.5e-34 150.6 275 36.0
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.1e-32 145.6 239 37.7
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 6.2e-31 139.8 234 38.5
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.4e-30 138.7 175 41.7
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.3e-30 137.9 294 34.0
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 8.9e-30 136.0 256 33.6
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.4e-27 128.6 391 28.6
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.7e-26 124.4 465 26.2
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 1.3e-25 122.1 96 61.5
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 3.6e-23 114.0 406 27.8
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.2e-23 113.2 186 37.1
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 1.4e-22 112.1 111 47.7
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.3e-22 111.3 127 44.1
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 4.0e-22 110.5 538 23.8
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 8.9e-22 109.4 186 36.6
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 9.2e-19 99.4 171 33.9
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.6e-18 98.6 95 52.6
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.0e-18 96.7 207 29.0
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 1.3e-17 95.5 161 36.6
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 5.1e-17 93.6 441 24.7
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 6.6e-17 93.2 219 28.8
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 3.3e-16 90.9 120 45.0
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 3.3e-16 90.9 93 52.7
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.1e-14 85.9 142 38.0
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 4.0e-14 84.0 243 28.4
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.3e-12 79.0 396 23.5
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 4.6e-10 70.5 77 40.3
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 5.1e-09 67.0 87 36.8
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 1.9e-08 65.1 189 25.4
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 1.8e-06 58.5 186 25.8
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 3.1e-06 57.8 117 33.3
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 3.1e-06 57.8 117 33.3


User provided reference genes

Program Settings