Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002017 Carpinus fangiana HOM05D001335 ORTHO05D001184 2.0e-122 442.6 219 100.0
Cfa000707 Carpinus fangiana HOM05D001335 ORTHO05D001184 5.2e-78 295.0 323 53.6
Cfa010645 Carpinus fangiana HOM05D001335 ORTHO05D001184 8.4e-68 261.2 324 49.1
Haze_06060 Corylus avellana HOM05D001335 ORTHO05D001184 1.8e-41 173.7 210 49.0
Prupe.2G153400 Prunus persica HOM05D001335 ORTHO05D001184 3.8e-20 102.8 202 37.6
QL08p029688 Quercus lobata HOM05D001335 ORTHO05D001184 4.7e-18 95.9 205 35.6
TWI74G0367 Tripterygium wilfordii HOM05D001335 ORTHO05D001184 4.4e-16 89.4 212 33.0
Manes.01G013500 Manihot esculenta HOM05D001335 ORTHO05D001184 5.7e-16 89.0 240 30.8
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 7.4e-16 88.6 96 53.1
Ciclev10004933m.g Citrus clementina HOM05D001335 ORTHO05D001184 9.7e-16 88.2 228 32.5
QL10p022402 Quercus lobata HOM05D001335 ORTHO05D001184 1.7e-15 87.4 225 32.4
QL04p074452 Quercus lobata HOM05D001335 ORTHO05D001184 2.8e-15 86.7 210 33.8
QL04p074409 Quercus lobata HOM05D001335 ORTHO05D001184 4.8e-15 85.9 210 33.8
QL04p074394 Quercus lobata HOM05D001335 ORTHO05D001184 6.3e-15 85.5 210 33.8
QL04p074383 Quercus lobata HOM05D001335 ORTHO05D001184 1.1e-14 84.7 210 33.8
GSVIVG01027214001 Vitis vinifera HOM05D001335 ORTHO05D001184 3.1e-14 83.2 92 50.0
QL04p074163 Quercus lobata HOM05D001335 ORTHO05D001184 4.1e-14 82.8 210 33.3
Eucgr.E02500 Eucalyptus grandis HOM05D001335 ORTHO05D001184 7.0e-14 82.0 216 32.9
RcHm_v2.0_Chr4g0402321 Rosa chinensis HOM05D001335 ORTHO05D001184 7.0e-14 82.0 221 28.5
Rhsim07G0021900 Rhododendron simsii HOM05D001335 ORTHO05D001184 9.1e-14 81.6 202 34.2
Eucgr.E02832 Eucalyptus grandis HOM05D001335 ORTHO05D001184 2.0e-13 80.5 209 34.0
Rhsim07G0022000 Rhododendron simsii HOM05D001335 ORTHO05D001184 2.0e-13 80.5 203 34.5
Actinidia22699 Actinidia chinensis HOM05D001335 ORTHO05D001184 4.5e-13 79.3 246 29.7
Oeu030135.1 Olea europaea HOM05D001335 ORTHO05D001184 4.5e-13 79.3 95 47.4
Thecc.01G142900 Theobroma cacao HOM05D001335 ORTHO05D001184 5.9e-13 79.0 234 27.8
Potri.014G077800 Populus trichocarpa HOM05D001335 ORTHO05D001184 7.7e-13 78.6 95 44.2
COL.COLO4_13067 Corchorus olitorius HOM05D001335 ORTHO05D001184 1.0e-12 78.2 96 46.9
MBI12_g02096_MAGBIO Magnolia biondii HOM05D001335 ORTHO05D001184 1.0e-12 78.2 95 47.4
COL.COLO4_37656 Corchorus olitorius HOM05D001335 ORTHO05D001184 1.3e-12 77.8 96 46.9
COL.COLO4_38539 Corchorus olitorius HOM05D001335 ORTHO05D001184 1.3e-12 77.8 96 46.9
Prupe.2G153300 Prunus persica HOM05D001335 ORTHO05D001184 1.3e-12 77.8 199 32.2
COL.COLO4_10065 Corchorus olitorius HOM05D001335 ORTHO05D001184 1.7e-12 77.4 251 30.3
COL.COLO4_28008 Corchorus olitorius HOM05D001335 ORTHO05D001184 1.7e-12 77.4 249 30.5
Prupe.2G120800 Prunus persica HOM05D001335 ORTHO05D001184 2.2e-12 77.0 200 32.5
CiPaw.03G101500 Carya illinoinensis HOM05D001335 ORTHO05D001184 3.8e-12 76.3 95 48.4
Glyma.14G192200 Glycine max HOM05D001335 ORTHO05D001184 6.5e-12 75.5 95 46.3
arahy.Tifrunner.gnm1.ann1.A57DXV Arachis hypogaea HOM05D001335 ORTHO05D001184 8.5e-12 75.1 294 25.9
Prupe.2G102200 Prunus persica HOM05D001335 ORTHO05D001184 8.5e-12 75.1 233 29.2
Sabra14G0054600 Salix brachista HOM05D001335 ORTHO05D001184 8.5e-12 75.1 95 44.2
Atru.chr5.387 Acer truncatum HOM05D001335 ORTHO05D001184 1.1e-11 74.7 94 42.6
Thecc.01G155400 Theobroma cacao HOM05D001335 ORTHO05D001184 1.1e-11 74.7 93 45.2
Lj6g0014367 Lotus japonicus HOM05D001335 ORTHO05D001184 1.9e-11 73.9 89 48.3
THA.LOC104818578 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 2.5e-11 73.6 207 32.4
Thecc.01G139900 Theobroma cacao HOM05D001335 ORTHO05D001184 2.5e-11 73.6 221 29.0
COL.COLO4_26872 Corchorus olitorius HOM05D001335 ORTHO05D001184 3.2e-11 73.2 220 30.9
Psat4g151480 Pisum sativum HOM05D001335 ORTHO05D001184 3.2e-11 73.2 96 44.8
Psat4g151520 Pisum sativum HOM05D001335 ORTHO05D001184 3.2e-11 73.2 95 43.2
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 4.2e-11 72.8 292 24.3
Ca_23771_v3 Cicer arietinum L. HOM05D001335 ORTHO05D001184 4.2e-11 72.8 96 45.8
COL.COLO4_28005 Corchorus olitorius HOM05D001335 ORTHO05D001184 4.2e-11 72.8 203 31.0
FvH4_4g05980 Fragaria vesca HOM05D001335 ORTHO05D001184 4.2e-11 72.8 99 44.4
FAN12G2882 Fragaria x ananassa HOM05D001335 ORTHO05D001184 4.2e-11 72.8 99 44.4
Glyma.15G174866 Glycine max HOM05D001335 ORTHO05D001184 4.2e-11 72.8 95 43.2
Gorai.011G127400 Gossypium raimondii HOM05D001335 ORTHO05D001184 4.2e-11 72.8 88 46.6
THA.LOC104823553 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 4.2e-11 72.8 206 31.6
Gorai.008G281100 Gossypium raimondii HOM05D001335 ORTHO05D001184 5.5e-11 72.4 236 29.2
Pp3c13_16160 Physcomitrium patens HOM05D001335 ORTHO05D001184 5.5e-11 72.4 220 28.2
Glyma.15G174700 Glycine max HOM05D001335 ORTHO05D001184 7.2e-11 72.0 95 42.1
Gohir.A12G261400 Gossypium hirsutum HOM05D001335 ORTHO05D001184 7.2e-11 72.0 236 29.2
CAN.G428.4 Capsicum annuum HOM05D001335 ORTHO05D001184 9.4e-11 71.6 208 30.3
Glyma.15G175500 Glycine max HOM05D001335 ORTHO05D001184 9.4e-11 71.6 95 42.1
Glyma.15G174400 Glycine max HOM05D001335 ORTHO05D001184 1.2e-10 71.2 95 42.1
Glyma.15G174900 Glycine max HOM05D001335 ORTHO05D001184 1.2e-10 71.2 95 42.1
Medtr8g028700 Medicago truncatula HOM05D001335 ORTHO05D001184 1.2e-10 71.2 90 46.7
GSVIVG01034402001 Vitis vinifera HOM05D001335 ORTHO05D001184 1.2e-10 71.2 95 45.3
Glyma.02G225400 Glycine max HOM05D001335 ORTHO05D001184 1.6e-10 70.9 95 42.1
Glyma.15G174500 Glycine max HOM05D001335 ORTHO05D001184 1.6e-10 70.9 95 42.1
Glyma.15G174800 Glycine max HOM05D001335 ORTHO05D001184 1.6e-10 70.9 95 42.1
Glyma.15G174932 Glycine max HOM05D001335 ORTHO05D001184 1.6e-10 70.9 95 42.1
Glyma.15G175000 Glycine max HOM05D001335 ORTHO05D001184 1.6e-10 70.9 95 42.1
Glyma.15G175100 Glycine max HOM05D001335 ORTHO05D001184 1.6e-10 70.9 95 42.1
Glyma.15G175300 Glycine max HOM05D001335 ORTHO05D001184 1.6e-10 70.9 95 42.1
Glyma.15G175400 Glycine max HOM05D001335 ORTHO05D001184 1.6e-10 70.9 95 42.1
Lalb_Chr01g0009081 Lupinus albus HOM05D001335 ORTHO05D001184 1.6e-10 70.9 93 45.2
Atru.chr1.1506 Acer truncatum HOM05D001335 ORTHO05D001184 2.1e-10 70.5 84 46.4
arahy.Tifrunner.gnm1.ann1.GQT8P7 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.1e-10 70.5 97 42.3
arahy.Tifrunner.gnm1.ann1.ITY2T4 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.1e-10 70.5 97 42.3
C04p47060 Brassica napus HOM05D001335 ORTHO05D001184 2.7e-10 70.1 237 30.8
BolC4t26301H Brassica oleracea HOM05D001335 ORTHO05D001184 2.7e-10 70.1 237 30.8
Glyma.15G174833 Glycine max HOM05D001335 ORTHO05D001184 2.7e-10 70.1 95 41.1
MBI04_g40840_MAGBIO Magnolia biondii HOM05D001335 ORTHO05D002834 2.7e-10 70.1 94 42.6
FAN06G2920 Fragaria x ananassa HOM05D001335 ORTHO05D001184 3.6e-10 69.7 83 50.6
ECA233G4894 Erigeron canadensis HOM05D001335 ORTHO05D001184 4.7e-10 69.3 96 44.8
Glyma.15G174300 Glycine max HOM05D001335 ORTHO05D001184 4.7e-10 69.3 95 41.1
Glyma.15G174965 Glycine max HOM05D001335 ORTHO05D001184 4.7e-10 69.3 95 41.1
Glyma.U005100 Glycine max HOM05D001335 ORTHO05D001184 4.7e-10 69.3 95 41.1
Os02g0677700 Oryza sativa ssp. japonica HOM05D001335 ORTHO05D001184 4.7e-10 69.3 95 44.2
Pp3c3_19940 Physcomitrium patens HOM05D001335 ORTHO05D001184 4.7e-10 69.3 206 27.7
TAR623G0152 Trochodendron aralioides HOM05D001335 ORTHO05D001184 4.7e-10 69.3 84 47.6
Lj6g0002919 Lotus japonicus HOM05D001335 ORTHO05D001184 6.1e-10 68.9 88 45.5
Peaxi162Scf00648g00315 Petunia axillaris HOM05D001335 ORTHO05D001184 6.1e-10 68.9 91 42.9
GSVIVG01034394001 Vitis vinifera HOM05D001335 ORTHO05D001184 6.1e-10 68.9 241 28.6
Sopen03g005250 Solanum pennellii HOM05D001335 ORTHO05D001184 8.0e-10 68.6 208 28.8
Glyma.15G174899 Glycine max HOM05D001335 ORTHO05D001184 1.0e-09 68.2 95 41.1
Lj6g0024184 Lotus japonicus HOM05D001335 ORTHO05D001184 1.0e-09 68.2 219 29.7
arahy.Tifrunner.gnm1.ann1.DD99A7 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.4e-09 67.8 97 42.3
PGSC0003DMG400014305 Solanum tuberosum HOM05D001335 ORTHO05D001184 1.4e-09 67.8 208 28.8
arahy.Tifrunner.gnm1.ann1.C4VQXX Arachis hypogaea HOM05D001335 ORTHO05D001184 1.8e-09 67.4 97 42.3
arahy.Tifrunner.gnm1.ann1.MCR2FH Arachis hypogaea HOM05D001335 ORTHO05D001184 1.8e-09 67.4 97 42.3
arahy.Tifrunner.gnm1.ann1.Q95WBF Arachis hypogaea HOM05D001335 ORTHO05D001184 1.8e-09 67.4 97 42.3
A04p13290 Brassica napus HOM05D001335 ORTHO05D001184 1.8e-09 67.4 210 31.9
C04p47040 Brassica napus HOM05D001335 ORTHO05D001184 1.8e-09 67.4 218 32.1
BolC4t26299H Brassica oleracea HOM05D001335 ORTHO05D001184 1.8e-09 67.4 218 32.1
CiPaw.01G220300 Carya illinoinensis HOM05D001335 ORTHO05D001184 1.8e-09 67.4 219 31.1
Medtr8g032850 Medicago truncatula HOM05D001335 ORTHO05D001184 1.8e-09 67.4 97 44.3
arahy.Tifrunner.gnm1.ann1.HBJB6N Arachis hypogaea HOM05D001335 ORTHO05D001184 2.3e-09 67.0 93 44.1
arahy.Tifrunner.gnm1.ann1.UFST2G Arachis hypogaea HOM05D001335 ORTHO05D001184 2.3e-09 67.0 93 44.1
Psat7g222160 Pisum sativum HOM05D001335 ORTHO05D001184 2.3e-09 67.0 96 43.8
Solyc03g026350.3 Solanum lycopersicum HOM05D001335 ORTHO05D001184 2.3e-09 67.0 208 28.4
AL7G48690 Arabidopsis lyrata HOM05D001335 ORTHO05D001184 3.0e-09 66.6 212 31.1
Cpa.g.sc90.22 Carica papaya HOM05D001335 ORTHO05D001184 3.0e-09 66.6 88 42.0
Eucgr.L02012 Eucalyptus grandis HOM05D001335 ORTHO05D001184 3.0e-09 66.6 259 27.4
BraA04t16987Z Brassica rapa HOM05D001335 ORTHO05D001184 5.2e-09 65.9 218 31.7
AUR62026342 Chenopodium quinoa HOM05D001335 ORTHO05D001184 5.2e-09 65.9 91 44.0
TPR.G17575 Trifolium pratense HOM05D001335 ORTHO05D001184 5.2e-09 65.9 97 43.3
Eucgr.E02833 Eucalyptus grandis HOM05D001335 ORTHO05D001184 8.8e-09 65.1 95 40.0
THA.LOC104798733 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 8.8e-09 65.1 95 41.1
arahy.Tifrunner.gnm1.ann1.G0UD5H Arachis hypogaea HOM05D001335 ORTHO05D001184 1.2e-08 64.7 85 47.1
arahy.Tifrunner.gnm1.ann1.Z9IP40 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.2e-08 64.7 85 47.1
BcaB06g27483 Brassica carinata HOM05D001335 ORTHO05D001184 1.2e-08 64.7 218 30.7
Thhalv10027745m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 1.2e-08 64.7 205 31.7
FvH4_2g11580 Fragaria vesca HOM05D001335 ORTHO05D001184 1.2e-08 64.7 94 40.4
FAN24G1612 Fragaria x ananassa HOM05D001335 ORTHO05D001184 1.2e-08 64.7 94 40.4
PGR031G3982 Punica granatum HOM05D001335 ORTHO05D001184 1.2e-08 64.7 95 44.2
AT5G40880 Arabidopsis thaliana HOM05D001335 ORTHO05D001184 1.5e-08 64.3 210 31.9
arahy.Tifrunner.gnm1.ann1.UI9RNN Arachis hypogaea HOM05D001335 ORTHO05D001184 1.5e-08 64.3 97 41.2
Thhalv10027743m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 1.5e-08 64.3 219 31.5
Nitab4.5_0007088g0030 Nicotiana tabacum HOM05D001335 ORTHO05D001184 1.5e-08 64.3 208 27.9
FAN21G3625 Fragaria x ananassa HOM05D001335 ORTHO05D001184 2.0e-08 63.9 95 45.3
Carub.0007s3462 Capsella rubella HOM05D001335 ORTHO05D001184 2.6e-08 63.5 214 30.4
AUR62006293 Chenopodium quinoa HOM05D001335 ORTHO05D001184 2.6e-08 63.5 92 42.4
BcaB06g27479 Brassica carinata HOM05D001335 ORTHO05D001184 3.3e-08 63.2 218 31.2
Ca_23759_v3 Cicer arietinum L. HOM05D001335 ORTHO05D001184 3.3e-08 63.2 93 41.9
PGR031G2888 Punica granatum HOM05D001335 ORTHO05D001184 3.3e-08 63.2 93 44.1
TWI77G1031 Tripterygium wilfordii HOM05D001335 ORTHO05D001184 3.3e-08 63.2 180 30.6
arahy.Tifrunner.gnm1.ann1.85MML8 Arachis hypogaea HOM05D001335 ORTHO05D001184 4.4e-08 62.8 94 41.5
FvH4_3g29280 Fragaria vesca HOM05D001335 ORTHO05D001184 4.4e-08 62.8 95 43.2
Hma1.2p1_0099F.1_g048650 Hydrangea macrophylla HOM05D001335 ORTHO05D001184 4.4e-08 62.8 82 43.9
Lsat_1_v5_gn_7_8200 Lactuca sativa HOM05D001335 ORTHO05D001184 4.4e-08 62.8 95 48.4
GSVIVG01019135001 Vitis vinifera HOM05D001335 ORTHO05D001184 4.4e-08 62.8 241 27.8
GSVIVG01034389001 Vitis vinifera HOM05D001335 ORTHO05D001184 4.4e-08 62.8 300 24.7
Zm00001eb250580 Zea mays HOM05D001335 ORTHO05D001184 4.4e-08 62.8 276 26.1
AT5G49200 Arabidopsis thaliana HOM05D001335 ORTHO05D001184 5.7e-08 62.4 240 28.8
PGR031G1916 Punica granatum HOM05D001335 ORTHO05D001184 5.7e-08 62.4 93 43.0
EL10Ac8g18934 Beta vulgaris HOM05D001335 ORTHO05D001184 7.5e-08 62.0 95 41.1
Sp7g01600 Schrenkiella parvula HOM05D001335 ORTHO05D001184 7.5e-08 62.0 208 30.3
arahy.Tifrunner.gnm1.ann1.W4V2BL Arachis hypogaea HOM05D001335 ORTHO05D001184 9.7e-08 61.6 95 41.1
arahy.Tifrunner.gnm1.ann1.8K9LCJ Arachis hypogaea HOM05D001335 ORTHO05D001184 1.3e-07 61.2 85 44.7
RcHm_v2.0_Chr6g0270771 Rosa chinensis HOM05D001335 ORTHO05D001184 1.3e-07 61.2 200 29.5
VMungo0647G2189 Vigna mungo HOM05D001335 ORTHO05D001184 1.3e-07 61.2 212 24.5
EL10Ac8g18932 Beta vulgaris HOM05D001335 ORTHO05D001184 1.7e-07 60.8 205 27.3
arahy.Tifrunner.gnm1.ann1.WU4XQ7 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.8e-07 60.1 94 40.4
EL10Ac8g18930 Beta vulgaris HOM05D001335 ORTHO05D001184 2.8e-07 60.1 95 40.0
Ca_25982_v3 Cicer arietinum L. HOM05D001335 ORTHO05D001184 2.8e-07 60.1 215 27.9
FAN15G2373 Fragaria x ananassa HOM05D001335 ORTHO05D001184 3.7e-07 59.7 199 27.6
Gohir.A10G150700 Gossypium hirsutum HOM05D001335 ORTHO05D001184 3.7e-07 59.7 200 30.0
FAN27G2370 Fragaria x ananassa HOM05D001335 ORTHO05D001184 4.8e-07 59.3 94 38.3
CARHR140940 Cardamine hirsuta HOM05D001335 ORTHO05D001184 6.3e-07 58.9 215 28.8
FAN02G0093 Fragaria x ananassa HOM05D001335 ORTHO05D001184 6.3e-07 58.9 199 27.6
EL10Ac8g18935 Beta vulgaris HOM05D001335 ORTHO05D001184 8.2e-07 58.5 205 26.8
Ah.05g175900 Amaranthus hybridus HOM05D001335 ORTHO05D001184 1.1e-06 58.2 95 38.9
Haze_20412 Corylus avellana HOM05D001335 ORTHO05D001184 1.1e-06 58.2 34 79.4
Haze_06056 Corylus avellana HOM05D001335 ORTHO05D001184 1.4e-06 57.8 34 79.4
TWI14G1133 Tripterygium wilfordii HOM05D001335 ORTHO05D001184 1.4e-06 57.8 207 28.0
CANSAT64G2527 Cannabis sativa HOM05D001335 ORTHO05D001184 2.4e-06 57.0 238 29.4
FAN15G2491 Fragaria x ananassa HOM05D001335 ORTHO05D001184 2.4e-06 57.0 199 27.1
Gohir.D12G262300 Gossypium hirsutum HOM05D001335 ORTHO05D001184 3.1e-06 56.6 46 56.5
arahy.Tifrunner.gnm1.ann1.S9B0CK Arachis hypogaea HOM05D001335 ORTHO05D001184 4.1e-06 56.2 94 38.3
CANSAT64G0204 Cannabis sativa HOM05D001335 ORTHO05D001184 4.1e-06 56.2 235 28.1
CANSAT64G0491 Cannabis sativa HOM05D001335 ORTHO05D001184 5.3e-06 55.8 238 29.0
CANSAT64G1887 Cannabis sativa HOM05D001335 ORTHO05D001184 5.3e-06 55.8 238 29.0
CANSAT64G2908 Cannabis sativa HOM05D001335 ORTHO05D001184 5.3e-06 55.8 238 29.0
Cpa.g.c26924.2 Carica papaya HOM05D001335 ORTHO05D001184 9.1e-06 55.1 200 32.0
HanXRQChr07g0195411 Helianthus annuus HOM05D001335 ORTHO05D001184 9.1e-06 55.1 78 39.7
Nitab4.5_0004090g0060 Nicotiana tabacum HOM05D001335 ORTHO05D001184 9.1e-06 55.1 93 39.8


User provided reference genes

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