Gene: AT5G40880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40880
  • Transcript Identifier AT5G40880.1
  • Gene Type Coding gene
  • Location Chr5 : 16379481-16381205 : positive

Gene Family Information

  • ID HOM05D001335
  • #Genes/#Species 472/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40880.1
  • uniprot Q9FKR9

Descriptions

  • Description WD-40 repeat family protein / zfwd3 protein (ZFWD3)
  • Computational description WD-40 repeat family protein / zfwd3 protein (ZFWD3); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd4 protein (ZFWD4) (TAIR:AT5G49200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
Gene Ontologynucleus1
GO:0030687
IBA
Gene Ontologypreribosome, large subunit precursor2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR036855 Zinc finger, CCCH-type superfamily
IPR000571 Zinc finger, CCCH-type
Mapman id Description
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF)