Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1368.6 730 100.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1196.0 692 88.4
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1195.6 698 88.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1192.6 690 87.4
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1192.2 689 89.1
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1188.3 699 87.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1186.0 692 87.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 689 87.4
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1181.4 693 87.3
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 689 88.2
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 691 87.4
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1177.9 689 87.4
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1177.2 689 87.8
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 689 87.1
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 687 87.0
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 689 86.9
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 687 86.5
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 687 86.5
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 687 86.5
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 689 85.8
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 692 86.0
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 687 86.0
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 698 85.7
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 687 86.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 668 88.0
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 721 83.8
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 689 86.4
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 688 86.0
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 687 85.0
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 696 85.6
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 689 85.3
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 689 85.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 689 85.2
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 703 84.6
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 715 83.8
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 687 85.0
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 689 85.1
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 710 83.2
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 704 85.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 687 85.2
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 687 85.2
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 687 85.2
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 689 85.2
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 689 84.9
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 689 84.8
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 689 84.6
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 689 84.5
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 690 84.9
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 687 84.9
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 720 82.1
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 688 84.3
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 696 84.8
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 687 84.4
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 687 84.3
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 715 82.4
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 689 85.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 689 85.3
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 689 85.2
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 688 84.0
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 668 85.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 687 82.8
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1124.8 689 82.9
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 697 82.6
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 707 83.2
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 687 82.4
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 689 82.6
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 688 83.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 687 82.4
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 687 82.4
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 687 82.4
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 687 82.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 687 83.7
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 688 82.6
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 698 82.8
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 687 83.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 689 84.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 689 83.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 687 82.0
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 698 81.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 689 84.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 687 81.7
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 688 82.1
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1108.2 764 76.6
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1108.2 735 78.6
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1107.4 689 81.7
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1105.9 687 81.2
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 687 81.1
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1091.6 711 80.7
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1086.2 689 79.7
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1082.8 663 83.3
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1082.0 688 79.7
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1080.9 666 84.1
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 5.0e-312 1073.9 735 77.0
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.3e-307 1059.3 687 78.6
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.3e-307 1059.3 689 78.2
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 7.4e-306 1053.5 729 75.2
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.0e-302 1043.1 709 76.3
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 3.1e-296 1021.5 670 77.5
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.4e-293 1012.7 700 73.7
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.3e-289 997.3 591 84.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.6e-284 981.1 631 81.1
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 8.5e-278 960.3 611 79.7
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.2e-277 958.4 693 69.3
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.2e-277 958.4 693 69.3
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 3.3e-274 948.3 685 69.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.5e-271 938.3 584 80.8
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.2e-269 931.8 691 68.3
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.2e-268 929.9 691 68.0
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.2e-262 909.1 683 71.9
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 2.2e-262 909.1 566 80.4
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.5e-261 905.6 554 82.9
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 4.2e-261 904.8 589 79.5
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 4.0e-251 871.7 498 89.4
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 4.3e-245 851.7 676 67.6
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.8e-234 814.7 479 87.5
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 6.8e-227 791.2 669 59.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 9.2e-216 754.2 668 56.1
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.8e-202 708.4 423 83.5
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-192 677.6 451 80.0
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.1e-155 554.7 712 44.5
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.8e-155 553.9 328 82.3
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.0e-146 523.9 755 39.1
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 9.8e-133 478.4 280 85.0
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.4e-126 458.0 273 83.5
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.5e-120 437.2 269 82.9
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.6e-119 433.3 349 63.9
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.4e-115 421.4 740 35.7
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.3e-112 409.8 233 86.7
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.5e-109 401.4 253 79.1
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.0e-109 401.0 237 84.8
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-108 397.9 242 85.5
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.3e-96 356.7 239 79.9
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.7e-79 300.4 181 79.0
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.3e-76 292.0 193 81.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.1e-75 288.9 215 70.2
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.6e-72 276.6 148 89.2
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.9e-70 269.6 195 71.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.4e-61 240.7 192 70.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-59 235.7 155 67.7
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 7.4e-56 223.0 156 72.4
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.0e-53 214.9 164 70.7
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.0e-53 214.9 180 67.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 3.4e-53 214.2 214 57.5
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.3e-49 201.4 490 29.6
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.1e-46 192.6 114 85.1
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.4e-46 192.2 115 87.0
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.5e-43 181.4 111 88.3
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 9.7e-40 169.5 104 80.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.3e-38 163.7 111 74.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.1e-30 139.4 100 72.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 7.7e-29 133.3 100 70.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 7.7e-29 133.3 100 70.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 5.0e-28 130.6 139 54.7
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.5e-28 129.8 81 81.5
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 7.0e-22 110.2 62 83.9
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-20 105.5 57 87.7
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 2.3e-20 105.1 69 71.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 2.3e-20 105.1 77 70.1
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 2.3e-20 105.1 59 86.4
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 4.0e-17 94.4 65 76.9
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 5.2e-17 94.0 73 67.1
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.6e-16 91.7 106 52.8
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.5e-16 90.1 93 52.7
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.1e-14 84.3 73 61.6
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 2.3e-12 78.6 78 52.6
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 6.6e-12 77.0 46 78.3
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 2.3e-09 68.6 40 82.5


User provided reference genes

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