Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 0.0e+00 1343.9 682 100.0
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.4e-195 684.9 694 54.2
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.1e-194 684.1 696 54.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.3e-190 670.6 701 52.9
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.8e-184 650.2 686 53.2
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.9e-183 646.7 687 51.5
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 9.3e-178 627.9 710 51.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.3e-176 623.2 681 53.2
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 8.7e-176 621.3 681 51.8
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.5e-175 620.5 679 52.7
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.3e-175 619.4 680 52.6
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.3e-174 617.5 680 52.5
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.2e-174 616.7 710 51.1
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.7e-171 607.1 694 50.4
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.8e-168 594.7 706 50.0
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.8e-166 589.0 709 47.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.4e-165 587.4 720 46.8
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.1e-165 585.9 697 48.8
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.2e-163 580.1 716 48.6
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.2e-163 580.1 711 47.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 5.0e-163 578.9 724 46.5
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.1e-162 577.8 696 48.3
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 4.2e-162 575.9 726 48.6
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.4e-162 574.7 682 48.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 4.7e-161 572.4 720 48.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 6.1e-161 572.0 673 48.7
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.0e-160 571.2 668 49.6
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 6.7e-160 568.5 676 48.2
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.1e-159 567.8 711 46.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.1e-159 567.8 699 46.9
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.0e-159 567.0 661 49.0
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 2.0e-159 567.0 709 46.8
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.6e-159 566.6 711 46.0
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 7.4e-159 565.1 709 46.7
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.7e-158 563.9 692 47.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.2e-158 563.5 699 47.2
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.8e-158 563.1 718 46.8
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 4.8e-158 562.4 707 46.7
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.4e-157 560.8 676 48.4
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.4e-157 560.1 721 46.6
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 3.1e-157 559.7 696 46.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 5.3e-157 558.9 694 48.7
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 3.5e-156 556.2 683 47.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 8.5e-155 551.6 720 47.1
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.9e-154 550.4 743 44.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 2.7e-153 546.6 711 45.4
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.3e-150 537.7 716 45.9
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.8e-149 533.9 713 45.4
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.8e-149 533.9 727 45.9
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 7.0e-149 531.9 743 45.0
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 7.0e-149 531.9 732 45.1
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 7.0e-149 531.9 841 40.1
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 7.0e-149 531.9 714 45.5
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.2e-148 531.2 708 44.6
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.2e-148 531.2 710 43.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 2.6e-148 530.0 705 45.5
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.5e-148 529.3 714 45.4
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.7e-147 527.3 696 45.4
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-146 523.5 740 44.3
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.5e-146 523.5 703 45.5
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.0e-144 518.1 707 45.5
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 3.0e-144 516.5 679 45.4
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.2e-144 515.8 579 49.6
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 6.8e-144 515.4 694 44.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.2e-143 514.6 695 45.2
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.2e-142 510.4 667 44.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 7.0e-141 505.4 719 43.4
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.7e-139 500.7 740 41.1
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.2e-139 500.4 679 44.3
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 5.5e-138 495.7 663 44.3
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-137 494.2 679 44.5
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.0e-136 491.5 699 44.6
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 6.8e-136 488.8 609 47.5
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.3e-134 484.6 674 45.1
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.1e-133 481.5 693 41.6
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 3.1e-133 479.9 711 41.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 2.5e-130 470.3 398 61.6
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 3.3e-130 469.9 714 42.2
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 7.2e-130 468.8 683 42.3
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.4e-128 464.5 406 59.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.2e-127 461.5 755 38.8
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.4e-127 459.9 713 40.4
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 8.3e-126 455.3 481 54.7
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.2e-125 451.8 694 40.5
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.7e-123 447.6 710 39.6
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.7e-123 447.6 512 51.4
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 8.6e-123 445.3 698 40.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.5e-122 444.5 704 41.1
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 2.8e-121 440.3 710 39.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-119 434.5 549 48.3
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 5.8e-119 432.6 675 40.4
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.7e-118 431.0 706 38.2
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.6e-116 422.9 550 46.5
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.6e-113 414.5 695 38.8
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.3e-112 410.6 694 40.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 8.9e-112 408.7 701 40.4
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.2e-111 408.3 580 42.9
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.5e-111 407.9 701 39.9
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.5e-111 407.9 690 40.9
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.6e-111 407.1 701 40.2
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.4e-111 406.8 671 39.2
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 2.2e-110 404.1 701 39.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.9e-110 402.9 700 37.6
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.9e-110 402.9 700 39.3
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.4e-109 399.4 674 38.6
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 3.6e-105 386.7 709 37.5
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.6e-103 380.6 719 35.2
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 6.0e-100 369.4 668 37.3
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.3e-99 367.5 663 37.3
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 9.6e-98 362.1 680 36.3
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 9.6e-98 362.1 698 34.2
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.2e-96 356.3 461 47.1
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.0e-91 340.5 557 41.1
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 9.6e-90 335.5 677 33.4
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-87 328.6 297 59.9
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.2e-85 320.5 482 41.5
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.6e-82 309.7 371 47.7
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 3.8e-78 297.0 411 44.8
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.2e-71 275.4 374 42.8
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.9e-66 258.1 395 41.0
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.1e-64 252.3 364 45.1
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.1e-64 252.3 713 28.2
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 4.5e-63 246.9 712 30.5
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.7e-62 245.0 546 33.0
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.4e-56 224.6 815 26.4
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.5e-55 220.3 172 66.9
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.4e-51 208.8 386 37.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.7e-50 203.4 618 27.0
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.2e-47 195.7 227 49.8
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.7e-44 184.5 140 63.6
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 4.2e-37 160.6 469 30.1
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.0e-34 151.8 228 40.4
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-32 146.0 182 45.1
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-32 144.4 575 24.5
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.5e-31 140.6 250 37.2
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-29 136.0 511 26.8
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.5e-26 125.6 236 34.7
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.8e-24 118.6 197 36.5
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.6e-23 115.5 98 56.1
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 2.2e-22 111.7 165 40.0
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 3.8e-22 110.9 98 55.1
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.5e-21 108.2 154 44.2
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 9.8e-18 96.3 321 29.3
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.4e-16 91.7 255 27.8
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.7e-15 88.2 144 38.9
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 7.7e-15 86.7 97 44.3
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.6e-13 80.5 307 26.7
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.6e-10 71.6 184 26.6
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 4.4e-10 70.9 66 54.5
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.7e-09 68.9 261 24.5
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.2e-09 68.6 64 57.8
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.9e-09 68.2 61 59.0
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.9e-09 68.2 113 34.5
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.4e-09 67.0 65 49.2
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 7.0e-08 63.5 51 51.0
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.2e-07 62.8 138 35.5
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 2.7e-07 61.6 188 26.6


User provided reference genes

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