Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g06770 Coffea canephora HOM05D000399 ORTHO05D017712 1.2e-49 199.5 101 100.0
CsaV3_6G031860 Cucumis sativus L. HOM05D000399 ORTHO05D000304 9.7e-31 136.7 97 68.0
Dinv40935 Davidia involucrata HOM05D000399 ORTHO05D000304 1.6e-30 136.0 97 67.0
vmacro18656 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.6e-30 136.0 97 70.1
CSS0038361 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D017712 6.3e-30 134.0 91 71.4
Atru.chr7.1826 Acer truncatum HOM05D000399 ORTHO05D000304 1.4e-29 132.9 97 66.0
AUR62013883 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.4e-29 132.9 95 66.3
ClCG08G009740 Citrullus lanatus HOM05D000399 ORTHO05D000304 2.4e-29 132.1 97 66.0
Hma1.2p1_1509F.1_g287800 Hydrangea macrophylla HOM05D000399 ORTHO05D017712 2.4e-29 132.1 97 66.0
Rhsim08G0003600 Rhododendron simsii HOM05D000399 ORTHO05D000304 5.3e-29 131.0 97 67.0
RcHm_v2.0_Chr6g0284721 Rosa chinensis HOM05D000399 ORTHO05D000304 1.2e-28 129.8 96 64.6
TAR624G0949 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.2e-28 129.8 97 66.0
GSVIVG01035494001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.2e-28 129.8 97 62.9
Actinidia16900 Actinidia chinensis HOM05D000399 ORTHO05D000304 2.0e-28 129.0 96 65.6
FvH4_2g18930 Fragaria vesca HOM05D000399 ORTHO05D000304 2.6e-28 128.6 96 63.5
FAN24G1392 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.6e-28 128.6 96 63.5
Lsat_1_v5_gn_8_70401 Lactuca sativa HOM05D000399 ORTHO05D000304 3.4e-28 128.3 97 63.9
Ciclev10007239m.g Citrus clementina HOM05D000399 ORTHO05D000304 4.5e-28 127.9 101 63.4
Sed0007965 Sechium edule HOM05D000399 ORTHO05D000304 7.7e-28 127.1 98 63.3
QL09p054073 Quercus lobata HOM05D000399 ORTHO05D000304 1.0e-27 126.7 96 64.6
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.2e-27 125.6 95 62.1
Lj7C209T3 Lonicera japonica HOM05D000399 ORTHO05D000304 2.2e-27 125.6 96 67.7
CiPaw.14G040900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.9e-27 125.2 96 62.5
ECA236G2155 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.9e-27 125.2 96 64.6
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 5.0e-27 124.4 98 58.2
Sc06g0000120 Simmondsia chinensis HOM05D000399 ORTHO05D000304 8.5e-27 123.6 96 62.5
PSO135G0437 Papaver somniferum HOM05D000399 ORTHO05D000304 1.4e-26 122.9 97 61.9
Hma1.2p1_0664F.1_g198960 Hydrangea macrophylla HOM05D000399 ORTHO05D017712 1.9e-26 122.5 112 57.1
Nitab4.5_0000508g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.5e-26 122.1 101 58.4
Nitab4.5_0017941g0010 Nicotiana tabacum HOM05D000399 ORTHO05D017712 2.5e-26 122.1 101 58.4
Thecc.09G065600 Theobroma cacao HOM05D000399 ORTHO05D000304 2.5e-26 122.1 96 62.5
DCAR_001243 Daucus carota HOM05D000399 ORTHO05D000304 3.2e-26 121.7 92 65.2
Aqoxy7G04095 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.2e-25 119.8 96 60.4
Solyc08g067210.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.2e-25 119.8 101 59.4
PGR044G1905 Punica granatum HOM05D000399 ORTHO05D000304 1.6e-25 119.4 97 57.7
Sopen08g021150 Solanum pennellii HOM05D000399 ORTHO05D000304 1.6e-25 119.4 101 59.4
TWI63G1283 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 1.6e-25 119.4 97 55.7
Manes.03G056500 Manihot esculenta HOM05D000399 ORTHO05D000304 2.1e-25 119.0 97 59.8
Eucgr.C03173 Eucalyptus grandis HOM05D000399 ORTHO05D000304 2.7e-25 118.6 101 57.4
Lsat_1_v5_gn_8_70500 Lactuca sativa HOM05D000399 ORTHO05D000304 2.7e-25 118.6 97 57.7
PSO724G0698 Papaver somniferum HOM05D000399 ORTHO05D000304 3.6e-25 118.2 97 59.8
HanXRQChr13g0398971 Helianthus annuus HOM05D000399 ORTHO05D000304 4.6e-25 117.9 95 60.0
Duzib150G0526 Durio zibethinus HOM05D000399 ORTHO05D000304 6.1e-25 117.5 96 59.4
Migut.E01470 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.0e-24 116.7 97 60.8
Nn8g38601 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.8e-24 115.9 97 59.8
Oeu030209.1 Olea europaea HOM05D000399 ORTHO05D000304 1.8e-24 115.9 94 60.6
unitig_37.g12915 Utricularia gibba HOM05D000399 ORTHO05D000304 5.1e-24 114.4 99 59.6
ECA236G2027 Erigeron canadensis HOM05D000399 ORTHO05D017712 1.1e-23 113.2 97 58.8
Prupe.8G202000 Prunus persica HOM05D000399 ORTHO05D000304 1.1e-23 113.2 96 57.3
ECA236G0176 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.0e-23 112.5 90 63.3
Sabra06G0168700 Salix brachista HOM05D000399 ORTHO05D000304 2.0e-23 112.5 97 55.7
Potri.018G047500 Populus trichocarpa HOM05D000399 ORTHO05D000304 2.5e-23 112.1 96 54.2
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.5e-23 112.1 90 57.8
Carub.0005s0970 Capsella rubella HOM05D000399 ORTHO05D000304 3.3e-23 111.7 98 54.1
AT3G43920 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 5.7e-23 110.9 98 53.1
arahy.Tifrunner.gnm1.ann1.79WVX3 Arachis hypogaea HOM05D000399 ORTHO05D000304 7.4e-23 110.5 97 56.7
Gohir.A06G080450 Gossypium hirsutum HOM05D000399 ORTHO05D000304 7.4e-23 110.5 96 57.3
Gohir.D06G080000 Gossypium hirsutum HOM05D000399 ORTHO05D000304 7.4e-23 110.5 96 57.3
Gorai.010G093100 Gossypium raimondii HOM05D000399 ORTHO05D000304 7.4e-23 110.5 96 57.3
Peaxi162Scf00922g00316 Petunia axillaris HOM05D000399 ORTHO05D000304 7.4e-23 110.5 97 54.6
Ah.11g040220 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.3e-22 109.8 96 53.1
HanXRQChr05g0136441 Helianthus annuus HOM05D000399 ORTHO05D000304 1.3e-22 109.8 96 55.2
DCAR_004371 Daucus carota HOM05D000399 ORTHO05D000304 1.7e-22 109.4 95 54.7
Gohir.D13G195300 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.7e-22 109.4 96 53.1
SalBow8G0161 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.7e-22 109.4 97 58.8
FAN15G1291 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.8e-22 108.6 80 63.8
Carub.0005s0966 Capsella rubella HOM05D000399 ORTHO05D000304 4.8e-22 107.8 98 52.0
Psat5g034960 Pisum sativum HOM05D000399 ORTHO05D000304 4.8e-22 107.8 97 56.7
BcaB02g10763 Brassica carinata HOM05D000399 ORTHO05D000304 6.3e-22 107.5 97 52.6
BraA06t25613Z Brassica rapa HOM05D000399 ORTHO05D000304 6.3e-22 107.5 98 52.0
SalBow8G4851 Salvia bowleyana HOM05D000399 ORTHO05D000304 6.3e-22 107.5 97 57.7
Sp5g17310 Schrenkiella parvula HOM05D000399 ORTHO05D000304 6.3e-22 107.5 98 52.0
Aqoxy2G01226 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 8.2e-22 107.1 96 55.2
Gorai.013G221400 Gossypium raimondii HOM05D000399 ORTHO05D000304 8.2e-22 107.1 96 53.1
Lalb_Chr23g0268041 Lupinus albus HOM05D000399 ORTHO05D000304 8.2e-22 107.1 97 56.7
SalBow8G2542 Salvia bowleyana HOM05D000399 ORTHO05D000304 8.2e-22 107.1 97 56.7
Aa31LG4G13570 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.1e-21 106.7 98 52.0
AL5G21950 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.1e-21 106.7 97 51.5
arahy.Tifrunner.gnm1.ann1.ZWX69H Arachis hypogaea HOM05D000399 ORTHO05D000304 1.1e-21 106.7 97 54.6
BcaC01g02230 Brassica carinata HOM05D000399 ORTHO05D000304 1.1e-21 106.7 98 52.0
A06p26820 Brassica napus HOM05D000399 ORTHO05D000304 1.1e-21 106.7 98 52.0
C03p67620 Brassica napus HOM05D000399 ORTHO05D000304 1.1e-21 106.7 98 52.0
BolSC21t60260H Brassica oleracea HOM05D000399 ORTHO05D000304 1.1e-21 106.7 98 52.0
THA.LOC104815087 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.1e-21 106.7 97 52.6
Thhalv10010061m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.8e-21 105.9 98 51.0
MBI16_g41119_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 1.8e-21 105.9 97 56.7
Glyma.04G057400 Glycine max HOM05D000399 ORTHO05D000304 3.1e-21 105.1 97 54.6
Phvul.009G083800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.1e-21 105.1 97 54.6
SGA_v2.0_scaffold169G38611 Striga asiatica HOM05D000399 ORTHO05D000304 3.1e-21 105.1 99 53.5
CARHR049880 Cardamine hirsuta HOM05D000399 ORTHO05D000304 4.1e-21 104.8 98 50.0
Prupe.1G401900 Prunus persica HOM05D000399 ORTHO05D000304 9.1e-21 103.6 97 55.7
MD15G1047500 Malus domestica HOM05D000399 ORTHO05D000304 1.2e-20 103.2 97 54.6
Lj1g0021094 Lotus japonicus HOM05D000399 ORTHO05D000304 1.5e-20 102.8 97 53.6
TPR.G3571 Trifolium pratense HOM05D000399 ORTHO05D000304 3.4e-20 101.7 95 52.6
Ca_15808_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 4.5e-20 101.3 96 54.2
COL.COLO4_21161 Corchorus olitorius HOM05D000399 ORTHO05D000304 7.7e-20 100.5 98 57.1
MD08G1046300 Malus domestica HOM05D000399 ORTHO05D000304 1.0e-19 100.1 97 54.6
VMungo1309G2494 Vigna mungo HOM05D000399 ORTHO05D000304 2.9e-19 98.6 96 51.0
Os10g0485600 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 3.8e-19 98.2 93 53.8
Medtr3g105390 Medicago truncatula HOM05D000399 ORTHO05D000304 2.5e-18 95.5 97 49.5
RcHm_v2.0_Chr6g0312121 Rosa chinensis HOM05D000399 ORTHO05D000304 5.5e-18 94.4 97 53.6
FvH4_2g30780 Fragaria vesca HOM05D000399 ORTHO05D000304 1.6e-17 92.8 97 53.6
FAN24G1462 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.6e-17 92.8 97 53.6
FAN27G0604 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.6e-17 92.8 97 53.6
CDE02G0393 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 2.7e-17 92.0 97 44.3
Zm00001eb143950 Zea mays HOM05D000399 ORTHO05D000304 4.7e-17 91.3 101 53.5
Haze_03339 Corylus avellana HOM05D000399 ORTHO05D000304 6.1e-17 90.9 95 50.5
FAN24G2100 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.1e-17 90.9 97 49.5
FvH4_2g07790 Fragaria vesca HOM05D000399 ORTHO05D000304 7.9e-17 90.5 97 50.5
FAN15G0102 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.9e-17 90.5 97 52.6
FAN15G0842 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.8e-16 89.4 97 50.5
FAN20G1611 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.8e-16 89.4 97 52.6
FAN27G2851 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.4e-15 84.7 92 50.0
HPP92_000547 Vanilla planifolia HOM05D000399 ORTHO05D000304 4.4e-15 84.7 98 48.0
Os01g0909200 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 7.4e-15 84.0 94 51.1
FAN20G0677 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.2e-14 82.4 97 48.5
Potri.006G218850 Populus trichocarpa HOM05D000399 ORTHO05D017712 2.2e-14 82.4 68 52.9
ATR0767G233 Amborella trichopoda HOM05D000399 ORTHO05D000304 2.6e-12 75.5 97 44.3
FAN06G4395 Fragaria x ananassa HOM05D000399 ORTHO05D017712 5.2e-08 61.2 60 50.0
Cfa010390 Carpinus fangiana HOM05D000399 ORTHO05D000304 4.4e-07 58.2 32 71.9
MD10G1163700 Malus domestica HOM05D000399 ORTHO05D000304 3.7e-06 55.1 31 74.2


User provided reference genes

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