Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 2.6e-222 775.0 380 100.0
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 1.3e-221 772.7 378 100.0
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 8.1e-163 577.4 379 76.3
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 1.1e-162 577.0 378 75.7
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 1.3e-160 570.1 382 73.8
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 3.2e-159 565.5 380 73.7
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 4.1e-159 565.1 378 72.8
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 7.1e-159 564.3 383 73.1
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 1.2e-158 563.5 381 73.8
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 4.6e-158 561.6 376 73.1
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 4.6e-158 561.6 378 71.7
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 3.0e-157 558.9 380 73.2
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 1.1e-156 557.0 379 72.8
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 4.3e-156 555.1 382 72.5
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 2.1e-155 552.7 378 72.5
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.8e-155 552.4 382 70.7
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 2.8e-155 552.4 378 72.5
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.7e-155 551.6 381 71.1
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 1.1e-154 550.4 380 73.4
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 5.2e-154 548.1 381 70.9
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 2.6e-153 545.8 380 72.4
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 7.6e-153 544.3 379 71.8
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 1.7e-152 543.1 380 72.4
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 2.2e-152 542.7 382 70.2
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.2e-152 542.7 388 69.1
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 2.9e-152 542.3 380 70.0
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 8.4e-152 540.8 383 69.7
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 2.4e-151 539.3 383 71.0
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.1e-151 538.5 383 69.7
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 7.1e-151 537.7 382 69.9
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 7.1e-151 537.7 411 67.9
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 2.1e-150 536.2 379 69.9
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 2.1e-150 536.2 379 71.5
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 2.1e-150 536.2 379 71.5
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 2.7e-150 535.8 382 69.4
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 3.5e-150 535.4 380 70.5
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 4.6e-150 535.0 380 71.3
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 6.0e-150 534.6 380 71.1
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 6.0e-150 534.6 383 69.7
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.0e-149 533.9 378 69.3
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.3e-149 533.5 378 68.5
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 3.9e-149 531.9 378 67.2
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 5.1e-149 531.6 380 70.8
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 6.6e-149 531.2 378 67.5
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 8.7e-149 530.8 380 70.5
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 8.7e-149 530.8 378 69.0
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 1.1e-148 530.4 380 70.5
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 2.5e-148 529.3 382 69.9
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 1.2e-147 526.9 381 68.8
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 2.1e-147 526.2 379 70.2
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 2.8e-147 525.8 380 71.1
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 2.8e-147 525.8 381 68.5
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 4.7e-147 525.0 382 68.1
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 4.7e-147 525.0 382 68.8
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.1e-146 523.9 383 67.6
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 9.0e-146 520.8 382 68.8
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 9.0e-146 520.8 386 68.4
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 1.2e-145 520.4 380 67.1
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 2.0e-145 519.6 380 70.3
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 2.6e-145 519.2 382 67.8
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 7.6e-145 517.7 378 69.6
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 9.9e-145 517.3 387 68.5
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 1.7e-144 516.5 381 68.8
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 1.2e-142 510.4 380 68.2
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 3.5e-142 508.8 383 67.6
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 4.6e-142 508.4 381 67.7
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 6.0e-142 508.1 382 67.0
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 3.0e-141 505.8 382 66.5
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 3.9e-141 505.4 412 62.4
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 2.5e-140 502.7 382 65.7
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.3e-140 502.3 380 68.9
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 7.3e-140 501.1 374 67.9
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.6e-139 500.0 382 65.2
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 1.6e-139 500.0 381 66.4
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.1e-139 499.6 384 66.9
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 4.8e-139 498.4 378 67.5
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.1e-138 497.3 378 67.5
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 6.9e-138 494.6 378 66.4
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 2.0e-137 493.0 380 65.5
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.6e-137 492.7 381 64.6
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 3.4e-137 492.3 380 63.7
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 7.6e-137 491.1 378 66.4
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 1.7e-136 490.0 380 65.5
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.2e-135 485.7 380 64.5
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 4.2e-135 485.3 378 64.3
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 4.2e-135 485.3 413 60.5
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 2.7e-134 482.6 382 64.9
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 3.5e-134 482.3 344 70.3
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 4.6e-134 481.9 378 65.6
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 3.9e-133 478.8 381 63.5
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 6.7e-133 478.0 382 62.8
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.5e-132 476.9 376 64.4
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 3.3e-132 475.7 379 63.9
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 4.8e-131 471.9 379 63.1
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 6.2e-131 471.5 378 64.3
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 1.8e-130 469.9 380 61.8
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 5.3e-130 468.4 333 70.3
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 6.9e-130 468.0 381 62.7
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 5.8e-129 464.9 382 61.8
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 1.3e-128 463.8 362 65.2
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 1.7e-128 463.4 378 62.4
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 2.2e-128 463.0 362 65.5
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.8e-128 462.2 380 62.4
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 4.9e-128 461.8 382 62.3
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 6.4e-128 461.5 378 62.2
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 8.4e-128 461.1 383 60.8
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 8.4e-128 461.1 383 60.8
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.1e-127 460.7 384 64.3
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 1.1e-127 460.7 379 62.3
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 2.1e-126 456.4 384 60.7
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 4.6e-126 455.3 380 61.8
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 4.6e-126 455.3 379 62.3
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 4.6e-126 455.3 383 61.9
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 6.0e-126 454.9 384 61.2
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 3.0e-125 452.6 383 59.8
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 3.9e-125 452.2 384 60.9
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 8.7e-125 451.1 383 61.6
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 1.1e-124 450.7 381 61.7
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 1.5e-124 450.3 384 59.6
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 3.3e-124 449.1 388 60.1
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 1.6e-123 446.8 364 62.6
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 1.6e-123 446.8 382 60.5
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 2.6e-121 439.5 380 60.3
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 5.8e-121 438.3 355 63.1
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 1.3e-120 437.2 289 73.4
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 3.2e-119 432.6 383 59.0
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 3.2e-119 432.6 380 58.7
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.8e-117 426.8 378 58.7
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 6.7e-117 424.9 383 57.7
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 8.7e-117 424.5 393 59.8
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 1.9e-116 423.3 357 60.2
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 2.8e-115 419.5 387 58.4
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 2.8e-115 419.5 387 58.4
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 2.4e-114 416.4 354 60.2
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 3.1e-114 416.0 387 58.4
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 5.9e-113 411.8 378 54.0
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 1.3e-112 410.6 287 71.4
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 2.2e-112 409.8 406 53.9
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 4.2e-111 405.6 382 57.6
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 7.9e-110 401.4 379 54.9
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 6.7e-109 398.3 382 56.3
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 2.5e-108 396.4 390 57.4
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 6.9e-106 388.3 378 57.1
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.4e-98 364.0 380 55.8
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 5.3e-98 362.1 322 57.1
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 3.5e-97 359.4 348 56.3
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 3.0e-93 346.3 373 51.7
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 4.8e-91 339.0 370 49.7
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 6.3e-91 338.6 406 48.0
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.5e-87 327.4 349 52.7
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 5.5e-87 325.5 330 53.0
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.7e-83 313.9 340 50.9
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 9.1e-82 308.1 388 46.6
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 6.6e-72 275.4 376 41.8
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.5e-68 264.2 268 52.6
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 1.0e-64 251.5 426 37.1
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 2.3e-64 250.4 317 44.8
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 4.3e-63 246.1 260 51.5
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 3.7e-59 233.0 367 38.4
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 3.7e-43 179.9 188 46.3
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 9.5e-39 165.2 229 45.0
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 3.4e-36 156.8 235 41.7
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 1.9e-34 151.0 235 40.9
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 1.3e-32 144.8 105 63.8
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 3.8e-27 126.7 115 60.9
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 3.8e-27 126.7 115 60.9
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 8.4e-27 125.6 115 60.0
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 1.6e-25 121.3 132 48.5
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 1.6e-25 121.3 319 29.5
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 1.6e-25 121.3 146 53.4
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 1.0e-24 118.6 380 29.5
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 2.3e-24 117.5 111 59.5
Actinidia14145 Actinidia chinensis HOM05D003678 ORTHO05D004340 8.7e-24 115.5 93 64.5
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 3.6e-22 110.2 434 25.6
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 2.6e-20 104.0 64 68.8
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 7.6e-20 102.4 135 48.9
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 9.9e-20 102.1 70 62.9
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 8.7e-16 89.0 99 54.5
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 7.4e-15 85.9 91 54.9
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 3.1e-13 80.5 98 44.9
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 1.0e-11 75.5 48 66.7
BcaC08g45872 Brassica carinata HOM05D005572 ORTHO05D032868 7.9e-09 65.9 33 87.9
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.9e-07 61.2 82 41.5
C05p46930 Brassica napus HOM05D003678 ORTHO05D016118 2.5e-07 60.8 36 69.4
BolC5t33423H Brassica oleracea HOM05D003678 ORTHO05D016118 2.5e-07 60.8 36 69.4
Cfa024431 Carpinus fangiana HOM05D003678 ORTHO05D124744 7.4e-07 59.3 99 36.4
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 2.1e-06 57.8 51 43.1
SHI21127 Sapria himalayana HOM05D003678 ORTHO05D004340 3.7e-06 57.0 36 61.1


User provided reference genes

Program Settings