Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.6e-208 729.2 363 100.0
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 7.5e-158 560.8 381 74.3
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 5.3e-156 554.7 363 74.9
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.0e-155 552.7 363 74.9
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 4.5e-155 551.6 365 75.1
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 3.8e-154 548.5 365 73.2
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 4.2e-153 545.0 365 74.0
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 5.5e-153 544.7 363 73.0
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 3.6e-152 542.0 365 74.5
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 8.0e-152 540.8 363 73.8
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.4e-151 540.0 363 72.7
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 1.8e-151 539.7 363 71.9
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.8e-151 539.7 363 72.7
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 8.8e-151 537.3 365 72.3
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 7.5e-150 534.3 364 72.8
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 9.8e-150 533.9 363 72.2
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 1.7e-149 533.1 363 73.6
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 2.2e-149 532.7 358 73.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 4.8e-149 531.6 365 72.9
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.4e-148 530.0 365 73.2
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.4e-148 529.3 364 73.4
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 3.1e-148 528.9 365 72.6
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 1.6e-147 526.6 363 71.3
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.6e-147 526.6 364 71.4
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.3e-146 522.7 338 76.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 3.8e-146 521.9 387 67.7
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 5.0e-146 521.5 364 71.2
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.3e-145 518.8 366 71.3
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-144 516.9 365 71.5
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 2.8e-144 515.8 365 70.7
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 3.6e-144 515.4 367 69.8
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 8.0e-144 514.2 363 72.2
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 8.0e-144 514.2 365 71.0
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 8.0e-144 514.2 365 71.2
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.8e-143 513.1 365 70.4
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 4.0e-143 511.9 365 71.0
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 4.0e-143 511.9 365 70.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 6.8e-143 511.1 375 71.5
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 8.9e-143 510.8 363 70.8
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.5e-142 510.0 363 71.6
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 3.4e-142 508.8 365 70.7
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.4e-142 508.8 368 70.1
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 7.5e-142 507.7 360 70.0
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.8e-142 507.3 365 70.7
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.8e-142 507.3 365 70.7
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.3e-141 506.9 364 72.0
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.3e-141 506.9 360 70.0
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.2e-141 506.1 361 71.2
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 2.8e-141 505.8 365 69.9
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 3.7e-141 505.4 364 69.8
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 2.4e-140 502.7 365 70.1
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 7.0e-140 501.1 366 69.4
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 4.5e-139 498.4 365 69.0
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 7.8e-139 497.7 368 69.0
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 7.8e-139 497.7 365 69.0
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.0e-138 497.3 366 69.7
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 3.8e-138 495.4 365 68.5
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 8.6e-138 494.2 365 68.8
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.1e-137 493.8 365 68.5
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 3.3e-137 492.3 365 68.5
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 2.1e-136 489.6 365 67.4
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 2.8e-136 489.2 365 67.4
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 4.7e-136 488.4 366 68.0
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.4e-135 486.9 365 67.4
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 3.0e-135 485.7 373 66.5
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.6e-134 482.6 395 63.0
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 2.6e-134 482.6 367 67.8
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 9.8e-134 480.7 370 65.9
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.2e-133 479.6 366 68.9
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.1e-132 477.2 363 66.4
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.0e-130 470.7 348 68.4
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 5.6e-129 464.9 308 73.7
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 5.6e-129 464.9 363 64.7
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 7.3e-129 464.5 363 64.7
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 2.1e-128 463.0 365 67.1
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.6e-128 462.2 365 66.8
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.8e-127 459.9 364 65.1
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 8.9e-127 457.6 365 64.9
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.5e-126 456.8 365 64.9
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 2.0e-126 456.4 369 64.2
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 2.6e-126 456.1 362 64.1
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 3.4e-126 455.7 363 63.9
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 7.5e-126 454.5 365 64.4
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 7.5e-126 454.5 366 64.2
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 9.8e-126 454.1 363 63.6
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 6.4e-125 451.4 390 61.5
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 2.4e-124 449.5 363 63.1
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.5e-123 445.7 365 65.2
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 8.6e-122 441.0 363 63.1
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.1e-121 440.7 365 64.1
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 3.6e-120 435.6 378 60.6
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 8.9e-119 431.0 319 68.3
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 3.7e-117 425.6 276 75.4
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 4.9e-117 425.2 367 60.5
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-114 417.5 364 63.2
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.3e-114 417.2 362 59.7
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.3e-114 416.4 368 60.1
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.5e-113 413.7 327 64.5
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.8e-111 406.8 360 59.7
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 4.0e-111 405.6 368 59.5
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.2e-110 404.1 303 68.0
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.5e-110 403.7 340 61.2
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.6e-105 384.4 379 57.3
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.1e-103 380.9 357 55.5
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.4e-100 369.8 385 49.1
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 3.6e-96 355.9 244 73.0
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.2e-93 346.7 309 57.9
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 5.1e-82 308.9 373 45.6
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 4.0e-79 299.3 276 57.6
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 6.9e-79 298.5 201 71.6
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 9.3e-76 288.1 353 42.8
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 3.3e-73 279.6 357 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.6e-72 277.3 384 41.9
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 3.7e-72 276.2 365 46.3
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 5.5e-68 262.3 213 61.0
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 4.6e-67 259.2 194 66.5
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 2.3e-66 256.9 198 66.7
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 8.2e-64 248.4 174 71.8
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 4.7e-59 232.6 170 68.2
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.1e-57 228.0 160 70.0
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 4.1e-55 219.5 169 69.2
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.0e-49 200.7 123 82.9
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 9.7e-49 198.4 197 52.8
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.8e-48 196.1 123 81.3
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.1e-47 193.4 135 71.1
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.1e-43 180.6 166 58.4
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-41 174.9 143 63.6
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 3.7e-40 169.9 308 37.7
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.0e-37 161.8 123 70.7
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.7e-35 153.7 254 39.0
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.6e-35 153.3 186 44.6
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 6.8e-34 149.1 142 59.9
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 9.8e-33 145.2 143 55.9
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 5.5e-28 129.4 114 58.8
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 9.8e-25 118.6 73 79.5
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.6e-22 111.3 71 78.9
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.0e-21 108.6 83 66.3
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 4.9e-16 89.7 206 27.2
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.9e-16 89.7 78 56.4
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-14 84.7 143 34.3
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 9.5e-12 75.5 301 25.6


User provided reference genes

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