Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.9e-311 1071.6 570 100.0
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 2.6e-165 586.3 567 54.9
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 6.4e-164 581.6 554 55.2
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 5.4e-163 578.6 572 55.8
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.1e-162 576.6 578 54.5
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 9.6e-160 567.8 569 54.7
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 4.5e-157 558.9 590 56.3
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 5.4e-155 552.0 585 50.9
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 2.7e-154 549.7 567 53.1
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 1.2e-149 534.3 568 50.5
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.2e-149 534.3 554 53.6
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 1.2e-149 534.3 601 48.6
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 4.5e-149 532.3 568 51.8
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 5.8e-149 531.9 537 53.8
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 9.9e-149 531.2 564 51.6
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.7e-148 530.4 558 52.5
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 8.4e-148 528.1 582 50.7
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 1.8e-145 520.4 539 52.9
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 3.9e-145 519.2 564 50.4
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 3.3e-144 516.2 568 52.3
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 1.3e-143 514.2 600 49.2
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 6.2e-143 511.9 573 50.4
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 8.1e-143 511.5 567 50.4
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 2.4e-142 510.0 573 49.6
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 5.3e-142 508.8 568 48.9
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 2.0e-141 506.9 568 48.4
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 5.8e-141 505.4 569 48.5
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 7.6e-141 505.0 570 48.4
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 6.5e-140 501.9 568 49.5
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 8.4e-140 501.5 569 49.4
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 7.1e-139 498.4 568 48.9
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 2.1e-138 496.9 579 48.9
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 6.0e-138 495.4 568 47.7
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 3.9e-137 492.7 713 44.0
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 5.1e-137 492.3 571 47.8
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 6.7e-137 491.9 552 50.9
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 8.7e-137 491.5 569 49.4
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 4.3e-136 489.2 568 47.5
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 5.7e-136 488.8 572 47.0
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 3.7e-135 486.1 572 50.3
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 6.3e-135 485.3 577 48.0
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 5.3e-134 482.3 502 54.4
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 5.3e-134 482.3 571 47.5
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 1.7e-132 477.2 566 47.5
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 2.9e-132 476.5 584 49.8
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 6.5e-132 475.3 570 47.9
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 1.1e-131 474.6 542 50.6
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.6e-130 469.2 499 51.3
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 6.1e-130 468.8 578 46.9
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 3.9e-129 466.1 579 46.6
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.3e-127 461.1 715 41.4
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 9.1e-126 454.9 577 48.7
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 2.6e-125 453.4 567 46.4
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 3.4e-125 453.0 600 44.8
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.1e-123 448.0 615 43.4
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 1.2e-122 444.5 569 45.5
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 1.2e-122 444.5 552 47.1
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 2.7e-122 443.4 568 45.1
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 4.6e-122 442.6 566 44.3
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.8e-121 440.7 574 47.2
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 2.3e-121 440.3 587 45.1
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 2.3e-121 440.3 518 49.4
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 5.1e-121 439.1 572 44.2
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 1.7e-119 434.1 585 44.1
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 6.9e-118 428.7 579 43.4
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 2.6e-117 426.8 566 44.7
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 5.9e-117 425.6 570 42.8
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 1.3e-116 424.5 585 43.1
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.1e-114 417.2 587 41.9
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 7.9e-114 415.2 569 42.2
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 3.3e-112 409.8 541 45.5
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 9.7e-112 408.3 534 47.0
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 2.2e-111 407.1 569 41.8
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 3.1e-110 403.3 567 41.6
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 4.5e-109 399.4 569 40.9
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 1.3e-108 397.9 569 42.9
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 6.5e-108 395.6 571 39.9
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 2.7e-106 390.2 571 41.2
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 4.0e-105 386.3 571 40.6
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 6.7e-105 385.6 510 44.5
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 2.6e-104 383.6 570 40.4
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 9.7e-104 381.7 571 40.5
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 1.2e-101 374.8 513 44.1
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 5.9e-101 372.5 574 39.7
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 1.7e-100 370.9 557 40.2
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 7.2e-99 365.5 573 38.6
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.7e-98 363.6 442 48.9
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 1.0e-97 361.7 505 48.7
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 2.6e-96 357.1 473 44.4
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.3e-92 344.7 423 48.2
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 6.5e-92 342.4 421 48.5
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 8.0e-90 335.5 575 37.9
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 7.5e-88 328.9 520 37.9
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 2.0e-85 320.9 473 42.1
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 2.5e-83 313.9 595 34.5
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 3.2e-78 297.0 391 40.9
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.5e-75 288.1 382 43.2
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 6.8e-73 279.3 205 63.4
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 9.8e-72 275.4 422 42.7
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 9.8e-72 275.4 355 47.6
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 1.6e-69 268.1 565 34.5
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 6.8e-65 252.7 417 39.8
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 4.4e-64 250.0 192 60.4
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 4.6e-61 240.0 219 56.2
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 8.6e-52 209.1 148 66.9
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.9e-51 208.0 148 66.9
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.4e-48 197.2 119 76.5
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.4e-46 191.0 137 65.0
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 8.4e-39 166.0 331 39.3
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 1.9e-38 164.9 238 52.5
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 7.9e-37 159.5 579 26.6
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.1e-35 155.6 149 55.0
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 6.2e-34 149.8 381 29.7
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 2.0e-32 144.8 121 62.0
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.5e-19 102.1 76 71.1
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.8e-18 97.1 65 70.8
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 6.9e-17 93.2 192 30.7
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.7e-13 81.3 64 60.9
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.7e-10 70.9 60 55.0
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 5.0e-07 60.5 28 89.3


User provided reference genes

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