Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 0.0e+00 1128.6 545 100.0
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 2.0e-279 965.3 539 86.3
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.2e-276 956.1 539 85.3
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 1.0e-275 953.0 541 84.8
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 2.9e-275 951.4 539 85.5
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 8.6e-275 949.9 539 83.7
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 1.9e-274 948.7 539 84.2
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 2.5e-274 948.3 539 84.6
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 9.5e-274 946.4 540 84.3
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 2.1e-273 945.3 541 84.1
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 2.8e-273 944.9 552 82.6
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 2.8e-273 944.9 540 83.7
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 6.1e-273 943.7 539 84.2
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 4.4e-271 937.6 596 78.2
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 5.7e-271 937.2 541 84.1
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 2.2e-270 935.3 520 85.4
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 8.3e-270 933.3 541 83.7
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 8.3e-270 933.3 541 83.7
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 1.8e-269 932.2 538 84.0
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 5.4e-269 930.6 539 82.7
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 1.2e-268 929.5 541 83.4
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 2.7e-268 928.3 540 82.2
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 3.5e-268 927.9 539 82.6
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 3.0e-267 924.9 540 81.9
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 3.0e-267 924.9 540 81.7
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 3.3e-266 921.4 540 81.9
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 7.3e-266 920.2 539 81.3
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 2.1e-265 918.7 540 82.4
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 2.8e-265 918.3 537 81.9
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 6.8e-264 913.7 529 83.7
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 1.2e-263 912.9 542 81.7
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 2.0e-263 912.1 540 81.5
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.0e-263 912.1 549 80.3
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 4.4e-263 911.0 540 80.4
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 1.3e-262 909.4 520 83.3
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 2.2e-262 908.7 527 82.9
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 2.9e-262 908.3 546 80.6
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 2.9e-262 908.3 593 75.4
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 8.3e-262 906.7 527 82.4
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 8.3e-262 906.7 545 80.2
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 1.1e-261 906.4 540 79.8
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 1.1e-261 906.4 540 79.8
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 1.9e-261 905.6 540 81.5
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 2.4e-261 905.2 540 80.6
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 7.0e-261 903.7 575 76.9
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 7.0e-261 903.7 527 82.4
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 2.0e-260 902.1 540 80.4
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.5e-260 901.4 520 81.9
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 4.6e-260 901.0 545 79.3
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 4.6e-260 901.0 520 82.7
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.0e-260 900.6 562 77.8
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 6.0e-260 900.6 540 80.7
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 1.7e-259 899.0 542 80.1
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 6.6e-259 897.1 525 80.8
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 6.6e-259 897.1 561 78.8
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 6.6e-259 897.1 566 77.0
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 1.1e-258 896.3 520 81.9
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 1.1e-258 896.3 520 81.3
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 1.5e-258 896.0 539 81.4
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.9e-258 895.6 520 82.1
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 2.5e-258 895.2 523 81.3
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 2.5e-258 895.2 491 86.2
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 4.3e-258 894.4 520 81.7
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 5.6e-258 894.0 513 81.9
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 2.8e-257 891.7 523 80.9
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 3.6e-257 891.3 539 79.6
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 6.2e-257 890.6 531 80.8
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 1.1e-256 889.8 539 79.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 2.3e-256 888.6 520 80.6
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 3.1e-256 888.3 531 80.8
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 8.3e-254 880.2 544 79.8
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 1.9e-253 879.0 543 77.9
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 8.6e-251 870.2 544 78.5
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.5e-250 869.4 544 78.5
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 1.2e-249 866.3 547 76.6
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 1.2e-249 866.3 547 76.6
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 1.6e-249 865.9 547 77.0
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 2.1e-249 865.5 521 79.3
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 2.1e-249 865.5 521 79.3
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 2.1e-249 865.5 544 78.3
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 1.4e-248 862.8 522 78.9
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 1.8e-248 862.4 547 77.5
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 3.1e-248 861.7 544 77.0
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 2.6e-247 858.6 493 83.2
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 5.8e-247 857.4 469 86.4
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.7e-246 855.9 539 76.6
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 2.9e-246 855.1 541 78.4
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 4.9e-246 854.4 496 82.1
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 6.6e-243 844.0 530 76.6
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 6.6e-243 844.0 518 78.2
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 9.6e-242 840.1 482 82.0
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 2.8e-241 838.6 540 76.5
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 4.7e-241 837.8 550 74.5
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.2e-239 833.2 541 74.5
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.0e-235 820.1 532 74.8
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 2.5e-234 815.5 544 74.3
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 5.6e-234 814.3 529 75.6
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 7.3e-234 813.9 530 75.7
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 1.6e-233 812.8 572 70.5
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 2.8e-233 812.0 544 74.1
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 4.2e-229 798.1 529 73.3
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 3.3e-226 788.5 520 73.5
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 3.4e-223 778.5 516 73.1
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 4.5e-223 778.1 476 77.3
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 5.3e-216 754.6 398 87.2
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 7.6e-215 750.7 549 68.5
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.0e-211 740.3 478 74.5
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 1.5e-210 736.5 426 80.3
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 3.3e-210 735.3 471 74.7
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 4.5e-207 724.9 407 86.0
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 3.0e-203 712.2 511 69.9
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 9.1e-200 700.7 388 85.3
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 2.3e-187 659.4 401 77.1
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 4.8e-185 651.7 329 91.5
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 2.1e-156 556.6 468 57.7
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 2.8e-156 556.2 473 57.9
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.0e-155 554.3 283 90.8
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.8e-155 553.5 392 70.7
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 3.4e-154 549.3 402 69.2
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.5e-141 507.3 350 71.7
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 5.8e-138 495.4 404 61.1
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 1.2e-132 477.6 451 55.0
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 2.8e-132 476.5 451 52.3
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 3.4e-122 443.0 334 67.1
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 4.3e-117 426.0 270 77.8
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 1.1e-91 341.7 181 86.2
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.8e-91 340.9 235 73.6
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 6.1e-87 325.9 181 85.1
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 3.7e-76 290.0 172 79.1
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 3.8e-57 226.9 134 78.4
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 4.4e-45 186.8 115 79.1
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 1.2e-42 178.7 102 78.4
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 3.7e-36 157.1 81 88.9
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 2.0e-29 134.8 68 91.2
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 5.8e-21 106.7 57 84.2
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 1.7e-20 105.1 66 74.2
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 1.7e-20 105.1 66 74.2
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 2.4e-19 101.3 53 88.7
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 1.1e-16 92.4 50 82.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 5.2e-14 83.6 86 50.0
CBR_g21303 Chara braunii HOM05D001677 ORTHO05D000002 5.3e-06 57.0 183 27.9


User provided reference genes

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