Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.9e-78 296.2 201 100.0
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.0e-60 237.3 180 81.7
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 4.0e-60 235.3 182 80.8
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.5e-59 233.4 199 87.4
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 7.5e-59 231.1 155 78.7
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 9.8e-59 230.7 176 80.7
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 2.8e-58 229.2 199 83.9
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 3.7e-58 228.8 208 68.8
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.1e-57 227.3 204 79.9
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.1e-57 227.3 199 86.9
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 1.1e-57 227.3 148 82.4
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 1.1e-57 227.3 148 82.4
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 2.4e-57 226.1 199 82.9
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.4e-57 226.1 148 81.8
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 2.4e-57 226.1 183 76.5
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 5.4e-57 224.9 208 68.3
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 5.4e-57 224.9 211 77.7
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.2e-56 223.8 152 79.6
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.2e-56 223.8 181 83.4
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 2.7e-56 222.6 144 86.1
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 4.5e-56 221.9 159 80.5
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.0e-55 220.7 151 83.4
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 1.0e-55 220.7 152 84.2
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.0e-55 220.7 179 82.7
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.3e-55 220.3 199 85.4
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.3e-55 219.5 199 85.4
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 3.8e-55 218.8 184 78.3
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 5.0e-55 218.4 200 80.0
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 8.6e-55 217.6 199 84.9
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 8.6e-55 217.6 152 81.6
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 8.6e-55 217.6 151 80.1
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 8.6e-55 217.6 200 83.0
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 8.6e-55 217.6 179 79.9
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.1e-54 217.2 205 75.6
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.1e-54 217.2 177 83.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.1e-54 217.2 177 83.6
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.5e-54 216.9 201 82.6
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 4.3e-54 215.3 152 82.2
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 7.3e-54 214.5 178 69.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 7.3e-54 214.5 152 78.9
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 9.5e-54 214.2 145 82.1
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.2e-53 213.8 180 81.1
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.2e-53 213.8 199 83.9
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.2e-53 213.8 151 76.2
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 2.8e-53 212.6 198 77.3
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 2.8e-53 212.6 149 81.2
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 3.6e-53 212.2 179 79.9
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 6.1e-53 211.5 145 84.8
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 6.1e-53 211.5 149 83.2
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 6.1e-53 211.5 157 77.1
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 8.0e-53 211.1 152 80.3
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 8.0e-53 211.1 159 79.9
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.4e-52 210.3 179 75.4
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.8e-52 209.9 149 80.5
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.1e-52 209.1 149 81.9
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 3.1e-52 209.1 207 76.3
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 3.1e-52 209.1 178 79.8
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.1e-52 209.1 202 81.7
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 4.0e-52 208.8 152 77.0
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 6.8e-52 208.0 202 78.7
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 6.8e-52 208.0 162 75.9
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 8.9e-52 207.6 149 75.2
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.5e-51 206.8 159 79.2
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.5e-51 206.8 159 79.2
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.5e-51 206.8 147 77.6
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.5e-51 206.8 158 69.6
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 2.0e-51 206.5 149 75.8
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.0e-51 206.5 180 63.3
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 2.0e-51 206.5 152 73.0
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.6e-51 206.1 160 76.9
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.6e-51 206.1 147 81.0
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 3.4e-51 205.7 161 69.6
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 3.4e-51 205.7 181 78.5
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 5.8e-51 204.9 181 77.9
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 5.8e-51 204.9 179 73.2
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 5.8e-51 204.9 152 76.3
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 9.8e-51 204.1 152 75.7
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 9.8e-51 204.1 182 75.8
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 9.8e-51 204.1 161 77.6
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.3e-50 203.8 152 78.3
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 1.7e-50 203.4 152 74.3
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-50 203.4 152 76.3
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-50 203.4 152 76.3
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.7e-50 203.4 187 78.6
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.7e-50 203.4 158 77.8
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 2.2e-50 203.0 156 77.6
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 3.7e-50 202.2 148 82.4
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.7e-50 202.2 158 77.8
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 3.7e-50 202.2 152 73.7
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 6.4e-50 201.4 163 66.3
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 6.4e-50 201.4 163 66.3
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 6.4e-50 201.4 168 66.1
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 8.3e-50 201.1 149 79.2
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 8.3e-50 201.1 149 79.2
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 8.3e-50 201.1 152 79.6
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 8.3e-50 201.1 152 75.7
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 8.3e-50 201.1 155 74.2
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-49 200.7 174 73.6
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.1e-49 200.7 154 75.3
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.4e-49 200.3 155 75.5
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.9e-49 199.9 154 79.2
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 2.4e-49 199.5 179 69.8
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 2.4e-49 199.5 197 58.4
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 2.4e-49 199.5 179 69.8
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 3.2e-49 199.1 167 65.9
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.2e-49 199.1 144 82.6
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 3.2e-49 199.1 147 80.3
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 3.2e-49 199.1 150 80.7
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 5.4e-49 198.4 149 73.8
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 7.0e-49 198.0 178 80.3
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 7.0e-49 198.0 158 77.2
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.6e-48 196.8 147 80.3
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 3.5e-48 195.7 142 81.0
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.5e-48 195.7 205 66.8
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 4.6e-48 195.3 179 68.7
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 4.6e-48 195.3 166 62.7
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 4.6e-48 195.3 186 75.8
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 6.0e-48 194.9 192 70.3
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.8e-48 194.5 143 74.1
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.0e-47 194.1 176 79.0
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.7e-47 193.4 187 63.1
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 3.9e-47 192.2 156 76.9
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 6.6e-47 191.4 152 73.0
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.9e-46 189.9 152 73.7
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.9e-46 189.9 166 61.4
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.9e-46 189.9 166 61.4
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.9e-46 189.9 166 61.4
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 5.6e-46 188.3 152 73.0
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 5.6e-46 188.3 155 75.5
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 7.3e-46 188.0 107 78.5
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 9.5e-46 187.6 149 70.5
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 9.5e-46 187.6 161 73.3
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.2e-45 187.2 107 77.6
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 2.1e-45 186.4 143 79.0
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 2.1e-45 186.4 143 79.0
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 3.6e-45 185.7 108 76.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.4e-44 183.7 150 76.7
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.1e-44 182.6 152 67.8
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 3.1e-44 182.6 91 93.4
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.2e-44 181.8 155 69.0
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-43 180.6 152 68.4
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 5.8e-43 178.3 109 76.1
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 7.5e-43 177.9 152 66.4
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 9.8e-43 177.6 93 92.5
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 2.2e-42 176.4 90 92.2
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.1e-41 172.2 89 89.9
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.2e-40 170.6 104 80.8
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 7.8e-40 167.9 154 68.2
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.5e-38 163.7 99 80.8
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.1e-33 147.5 134 63.4
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 4.1e-33 145.6 129 61.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.6e-32 143.7 175 63.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 1.9e-30 136.7 80 76.2
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 3.6e-29 132.5 102 67.6
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 4.0e-28 129.0 74 86.5
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.4e-26 121.7 76 68.4
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 2.7e-24 116.3 184 48.9
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.0e-24 115.2 114 83.3
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.3e-23 113.2 95 60.0
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 2.4e-20 103.2 94 50.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 6.9e-20 101.7 107 55.1
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 5.8e-19 98.6 107 54.2
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.2e-18 96.7 49 85.7
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 6.2e-13 78.6 87 56.3
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 8.1e-13 78.2 86 57.0
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 8.1e-13 78.2 86 55.8
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 6.9e-12 75.1 86 55.8
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 6.9e-12 75.1 86 55.8
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 6.9e-12 75.1 86 55.8
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.0e-11 73.6 44 79.5
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 4.2e-09 65.9 40 77.5
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.3e-07 60.8 35 77.1


User provided reference genes

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