Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 6.7e-125 450.7 223 100.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.3e-116 421.8 222 92.3
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.6e-113 412.1 224 89.7
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.7e-113 410.6 224 89.3
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.2e-112 409.1 224 88.8
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.3e-109 399.1 225 88.0
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.1e-108 396.7 223 86.1
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.2e-105 386.7 223 82.5
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 7.7e-105 384.0 218 84.4
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 2.9e-104 382.1 223 82.5
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.0e-104 381.3 223 82.1
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 7.2e-103 377.5 221 81.9
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.2e-102 376.7 215 87.4
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 3.6e-102 375.2 219 82.2
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 4.7e-102 374.8 219 82.6
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 7.9e-102 374.0 223 79.4
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.8e-101 372.9 223 78.5
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.3e-101 372.5 223 82.1
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 6.7e-101 370.9 217 82.0
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 8.8e-101 370.5 224 81.7
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-100 370.2 223 78.5
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.5e-100 369.8 223 77.6
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.0e-100 369.4 219 78.1
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.7e-100 367.9 218 81.2
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 7.4e-100 367.5 222 77.0
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.3e-99 366.7 223 78.0
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 2.2e-99 365.9 223 79.4
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 6.3e-99 364.4 265 70.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 8.2e-99 364.0 223 76.2
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.4e-98 362.5 216 79.2
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.4e-98 362.5 216 79.2
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 7.0e-98 360.9 224 77.7
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.6e-97 359.0 216 77.3
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.5e-97 358.6 224 76.8
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 3.5e-97 358.6 223 74.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 5.9e-97 357.8 225 76.0
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.0e-96 357.1 223 76.2
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.5e-96 354.0 221 74.7
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.5e-95 353.2 216 75.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 4.2e-95 351.7 223 74.4
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 5.5e-95 351.3 223 73.5
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-94 349.7 260 66.5
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-94 349.7 260 66.5
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.6e-94 348.6 238 72.7
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 3.6e-94 348.6 224 73.7
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 4.7e-94 348.2 216 73.6
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 6.1e-94 347.8 224 73.2
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.0e-93 347.1 223 73.5
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.4e-93 346.7 223 70.4
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.8e-93 346.3 223 73.5
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.3e-93 345.9 223 70.0
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 4.0e-93 345.1 251 69.7
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.6e-92 342.4 218 72.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.6e-92 342.4 218 78.9
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 3.3e-92 342.0 214 71.5
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 6.3e-91 337.8 223 75.3
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 8.2e-91 337.4 218 71.6
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 3.1e-90 335.5 218 71.6
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 9.1e-90 334.0 218 70.6
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.2e-89 333.6 218 71.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 2.0e-89 332.8 219 72.6
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 3.5e-89 332.0 223 71.7
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 3.5e-89 332.0 215 72.6
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.5e-89 332.0 223 70.9
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 5.9e-89 331.3 252 65.5
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.0e-88 330.5 216 69.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.7e-88 329.7 218 70.2
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.1e-87 327.0 218 69.3
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 4.2e-87 325.1 215 69.8
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 4.2e-87 325.1 215 69.8
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.6e-86 323.2 215 69.3
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-85 320.5 218 67.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.8e-85 319.7 215 68.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.3e-85 319.3 243 67.1
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.8e-85 317.4 217 68.7
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.2e-84 317.0 217 67.7
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-84 317.0 215 69.8
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.8e-83 311.6 202 70.3
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 6.3e-83 311.2 210 69.0
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 6.3e-83 311.2 217 65.9
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.1e-82 310.5 215 67.0
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.4e-82 310.1 218 66.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.4e-82 310.1 218 65.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.8e-82 309.7 216 64.8
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.4e-82 309.3 215 65.1
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.1e-82 308.9 215 66.5
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 9.1e-82 307.4 218 65.1
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 2.0e-81 306.2 215 66.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.7e-81 305.8 215 66.0
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.7e-81 305.8 215 66.0
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.7e-81 305.8 215 66.0
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 3.5e-81 305.4 212 67.9
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 5.0e-80 301.6 215 65.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 8.5e-80 300.8 223 63.7
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 8.5e-80 300.8 217 64.5
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.1e-79 300.4 215 65.6
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.9e-79 299.7 218 62.8
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.2e-79 298.5 180 78.3
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.2e-79 298.5 218 62.4
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.6e-78 296.6 218 62.4
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.0e-77 293.9 211 64.5
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.8e-76 287.3 189 70.9
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.7e-75 286.6 218 62.4
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-74 281.2 215 63.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-73 279.6 185 70.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 3.3e-71 272.3 170 78.8
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 4.3e-71 271.9 225 54.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.3e-71 271.9 171 78.4
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 4.3e-71 271.9 217 54.8
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.5e-71 270.8 221 61.1
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.8e-69 266.5 224 62.5
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 5.2e-69 265.0 218 59.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 6.8e-69 264.6 165 76.4
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 6.8e-69 264.6 136 94.1
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-67 260.4 213 61.5
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.4e-67 258.1 167 75.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.4e-67 258.1 167 75.4
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.4e-66 256.9 141 83.0
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-66 256.5 169 69.2
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.4e-66 256.1 169 71.6
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-65 253.4 169 72.2
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 2.3e-64 249.6 219 48.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 9.5e-63 244.2 189 64.0
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.8e-62 242.7 142 78.9
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 8.0e-62 241.1 151 80.8
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 5.2e-61 238.4 168 68.5
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 8.9e-61 237.7 127 92.1
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.5e-60 236.9 164 70.7
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 9.8e-60 234.2 213 46.9
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.2e-59 233.0 212 50.5
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-56 224.2 166 65.7
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.0e-56 224.2 212 52.8
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.2e-54 214.9 143 69.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 3.4e-52 209.1 208 45.2
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 9.8e-52 207.6 211 46.9
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.9e-51 206.1 146 70.5
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.4e-50 201.8 131 72.5
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 9.2e-50 201.1 214 44.4
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 4.6e-49 198.7 191 49.2
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 2.1e-46 189.9 219 38.4
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-46 189.9 138 67.4
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 2.1e-46 189.9 123 73.2
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.9e-44 181.0 135 65.2
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-41 172.2 117 68.4
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 8.6e-40 167.9 128 68.8
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 5.6e-39 165.2 166 52.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 5.8e-36 155.2 101 72.3
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 8.1e-30 134.8 91 72.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.7e-27 127.1 76 77.6
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 7.1e-26 121.7 81 69.1
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.0e-24 117.9 130 50.0
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.9e-24 115.9 143 44.8
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.3e-21 105.5 83 66.3
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.9e-19 99.0 111 48.6
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 8.4e-19 98.2 52 78.8
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 3.2e-18 96.3 52 78.8
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.6e-14 84.0 102 47.1
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 4.5e-12 75.9 163 28.8
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.8e-12 75.5 66 56.1
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-08 64.7 49 61.2
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 1.3e-08 64.3 55 56.4
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 1.3e-08 64.3 55 56.4
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 2.3e-08 63.5 54 57.4


User provided reference genes

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