Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 0.0e+00 1315.8 638 100.0
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 5.7e-151 538.9 607 49.6
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.4e-149 534.3 632 47.8
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 7.0e-149 531.9 655 47.2
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 7.7e-148 528.5 523 53.3
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.7e-139 500.7 497 53.5
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 6.1e-137 492.3 522 52.7
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.0e-132 477.2 458 55.5
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.3e-131 473.8 530 49.1
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.1e-130 471.5 448 53.8
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 5.6e-130 469.2 448 53.8
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 6.2e-129 465.7 626 43.6
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 7.5e-127 458.8 572 47.0
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.7e-126 457.6 434 56.2
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-123 448.0 481 49.7
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-121 441.0 553 46.5
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 4.6e-116 422.9 530 44.9
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.0e-115 420.2 453 50.8
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.0e-115 420.2 453 50.8
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.1e-115 419.5 424 50.9
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.1e-114 418.3 727 39.1
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.3e-114 416.8 524 44.1
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 6.2e-113 412.5 609 42.9
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 4.9e-110 402.9 386 52.8
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.6e-108 397.9 532 43.4
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 8.6e-107 392.1 367 54.5
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.5e-106 391.3 531 43.3
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 3.1e-104 383.6 446 47.1
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 8.9e-104 382.1 517 43.5
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 8.9e-104 382.1 542 42.8
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.7e-102 377.9 635 39.4
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.2e-100 371.7 639 38.8
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 3.9e-99 366.7 473 47.6
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.5e-98 364.8 464 45.5
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.5e-98 364.0 554 42.4
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 5.6e-98 362.8 477 45.1
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 9.6e-98 362.1 522 41.2
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-97 361.3 551 41.9
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.6e-97 361.3 532 41.9
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 2.1e-97 360.9 443 45.1
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.1e-96 358.6 560 40.2
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 6.9e-96 355.9 443 45.8
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 9.0e-96 355.5 448 44.6
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.2e-95 355.1 419 48.4
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 1.5e-95 354.8 438 45.0
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.4e-95 353.6 439 45.3
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 4.5e-95 353.2 534 40.8
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.6e-95 352.4 449 44.3
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 7.6e-95 352.4 383 50.9
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 9.9e-95 352.1 431 45.7
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 9.9e-95 352.1 504 41.3
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 9.9e-95 352.1 460 44.1
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.9e-94 350.5 444 44.8
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 4.9e-94 349.7 394 48.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 1.4e-93 348.2 493 42.6
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 3.2e-93 347.1 748 35.0
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 2.1e-92 344.4 448 45.1
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.0e-91 342.0 499 39.7
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.9e-90 337.8 433 44.8
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 4.3e-90 336.7 445 43.8
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.8e-89 334.0 376 47.3
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.8e-88 331.3 427 45.2
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 4.0e-88 330.1 434 44.0
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 6.9e-88 329.3 487 41.5
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 4.5e-87 326.6 531 38.8
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.3e-86 325.1 382 49.7
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 3.8e-86 323.6 510 39.8
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-85 322.0 353 49.9
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.4e-85 320.9 444 44.1
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 3.2e-85 320.5 381 46.5
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.1e-85 319.3 422 43.8
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 2.1e-84 317.8 368 45.1
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 2.1e-84 317.8 414 44.9
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 1.1e-80 305.4 558 36.9
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.1e-80 305.4 435 40.7
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.8e-80 304.7 452 40.3
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.4e-80 304.3 509 39.1
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 2.4e-80 304.3 401 45.6
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-79 302.0 511 39.9
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 5.8e-79 299.7 312 52.6
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.3e-78 298.5 382 43.2
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 2.2e-78 297.7 423 40.9
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 4.9e-78 296.6 426 41.3
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.1e-77 295.4 371 46.4
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.5e-77 294.3 444 41.4
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.5e-77 294.3 444 41.2
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 3.2e-77 293.9 429 42.0
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 3.2e-77 293.9 432 40.5
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 7.1e-77 292.7 429 42.0
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 7.1e-77 292.7 429 42.0
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.5e-76 290.4 498 36.3
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 3.5e-76 290.4 444 39.2
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 3.5e-76 290.4 376 44.7
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.3e-75 288.5 429 40.6
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.8e-75 288.1 429 42.9
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 3.0e-75 287.3 376 44.1
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 3.9e-75 287.0 432 40.5
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 8.7e-75 285.8 423 42.3
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.5e-74 285.0 426 42.0
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.9e-74 284.6 306 49.0
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 8.2e-73 279.3 419 39.9
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.2e-71 275.4 412 40.5
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 4.2e-69 266.9 475 36.8
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.4e-64 251.9 487 35.9
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.5e-63 248.4 410 39.0
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.0e-62 245.7 290 44.5
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 3.8e-62 243.8 295 49.8
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 3.9e-59 233.8 303 44.6
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 2.8e-57 227.6 581 31.3
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 2.4e-56 224.6 514 31.9
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 1.5e-55 221.9 474 32.7
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.7e-52 211.1 291 41.6
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.0e-51 207.6 352 39.2
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.1e-50 205.7 304 40.5
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 1.7e-49 201.8 315 40.0
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.2e-49 199.5 324 37.7
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 4.1e-48 197.2 161 58.4
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.7e-46 191.8 384 34.4
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 2.2e-46 191.4 146 64.4
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.5e-46 189.9 272 40.4
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.5e-46 189.5 266 41.0
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-44 185.7 222 44.6
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 1.6e-44 185.3 239 42.7
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 3.6e-44 184.1 235 44.3
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.1e-44 183.3 375 33.6
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 8.8e-43 179.5 382 36.1
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.3e-42 177.6 325 39.1
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.4e-40 172.2 537 28.5
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 7.7e-39 166.4 486 28.6
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.7e-39 166.4 545 27.7
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 9.4e-37 159.5 355 32.4
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 4.0e-35 154.1 154 52.6
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 8.8e-35 152.9 153 52.3
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.3e-33 146.7 394 28.2
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.1e-32 146.0 216 43.1
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.4e-32 145.6 214 38.3
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 1.3e-30 139.0 246 36.2
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 9.5e-29 132.9 242 34.7
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 1.2e-28 132.5 104 63.5
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 2.8e-28 131.3 166 42.8
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.7e-25 122.1 380 30.3
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 8.3e-25 119.8 370 28.1
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.2e-23 115.9 100 57.0
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.3e-22 111.7 128 47.7
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 6.6e-22 110.2 458 25.8
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 1.2e-20 105.9 455 24.6
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 4.7e-20 104.0 316 26.9
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 2.3e-19 101.7 210 35.2
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 8.9e-19 99.8 99 52.5
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 1.5e-18 99.0 192 32.8
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 2.6e-18 98.2 114 48.2
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 9.8e-18 96.3 192 32.8
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 1.3e-17 95.9 198 32.8
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.5e-13 81.6 456 23.7
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 7.3e-13 80.1 142 33.8
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 2.8e-12 78.2 210 29.5
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 1.1e-11 76.3 61 59.0
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.5e-10 72.4 272 26.8
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 3.7e-09 67.8 119 36.1
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 7.0e-08 63.5 93 34.4
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 7.8e-07 60.1 98 38.8


User provided reference genes

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