Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.2e-299 1032.3 510 100.0
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 2.3e-274 948.3 504 90.7
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 7.5e-273 943.3 504 89.5
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 1.4e-271 939.1 506 91.3
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 1.0e-269 932.9 504 89.7
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 6.6e-269 930.2 505 90.1
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-268 929.5 504 89.5
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 2.5e-268 928.3 501 89.2
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.5e-268 928.3 504 88.9
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 2.5e-268 928.3 504 89.3
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.3e-268 927.9 504 89.1
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 2.8e-267 924.9 504 88.3
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 3.6e-267 924.5 504 89.5
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 6.2e-267 923.7 495 89.7
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 8.0e-267 923.3 508 88.2
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 8.0e-267 923.3 505 89.5
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 1.0e-266 922.9 504 89.1
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.0e-265 918.7 504 87.3
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 2.0e-265 918.7 501 89.0
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 3.4e-265 917.9 504 87.3
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 4.4e-265 917.5 500 88.2
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 5.8e-265 917.1 496 89.5
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 7.5e-265 916.8 500 87.8
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 9.8e-265 916.4 500 87.6
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 9.8e-265 916.4 507 87.4
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 9.8e-265 916.4 500 87.6
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.3e-264 916.0 505 88.7
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.2e-264 915.2 497 87.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 2.9e-264 914.8 504 86.9
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 4.9e-264 914.1 497 86.9
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 8.3e-264 913.3 504 87.5
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.1e-263 912.9 500 87.8
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.1e-263 912.9 504 85.7
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.1e-263 911.0 500 87.6
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 9.2e-263 909.8 505 86.5
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 9.2e-263 909.8 504 87.7
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.2e-262 909.4 500 87.6
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.6e-262 909.1 500 87.0
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.6e-262 909.1 497 86.7
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 2.0e-262 908.7 500 87.0
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 2.7e-262 908.3 504 87.3
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 6.0e-262 907.1 500 86.8
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 6.0e-262 907.1 560 80.0
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.3e-261 906.0 504 86.3
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 6.6e-261 903.7 504 87.5
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 8.6e-261 903.3 499 87.4
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 3.3e-260 901.4 493 87.2
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 5.6e-260 900.6 493 87.2
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 9.5e-260 899.8 494 86.8
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 1.6e-259 899.0 494 86.0
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 2.1e-259 898.7 531 84.4
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 2.8e-259 898.3 505 85.7
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 4.7e-259 897.5 505 85.7
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 6.2e-259 897.1 494 86.2
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 1.1e-258 896.3 489 88.3
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 3.1e-258 894.8 489 88.3
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 3.4e-257 891.3 509 85.5
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 7.5e-257 890.2 504 84.9
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 7.5e-257 890.2 504 85.7
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 7.5e-257 890.2 483 88.8
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 9.8e-257 889.8 504 85.3
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 2.2e-256 888.6 489 87.5
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 2.9e-256 888.3 483 88.4
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 4.9e-256 887.5 499 84.4
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 6.4e-256 887.1 517 83.2
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 6.4e-256 887.1 504 85.3
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.4e-256 887.1 504 85.3
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.1e-255 886.3 519 82.9
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 3.2e-255 884.8 504 84.5
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 4.1e-255 884.4 533 82.2
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 5.4e-255 884.0 507 85.2
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 2.7e-254 881.7 480 88.1
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 6.6e-253 877.1 479 87.7
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.6e-251 872.5 498 85.5
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 3.6e-251 871.3 498 86.5
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 3.1e-250 868.2 498 83.5
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 4.0e-250 867.8 472 87.7
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 1.5e-249 865.9 543 78.5
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 3.2e-247 858.2 494 83.8
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 1.7e-245 852.4 487 82.8
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 6.6e-245 850.5 510 81.2
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 8.6e-245 850.1 499 81.4
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.5e-244 849.4 499 81.6
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 3.3e-244 848.2 479 87.3
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 7.3e-244 847.0 502 81.3
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.2e-243 844.0 479 86.2
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.8e-242 842.4 480 85.2
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 3.1e-242 841.6 454 90.7
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 4.9e-240 834.3 445 90.6
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 4.0e-234 814.7 517 79.1
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.2e-233 813.1 525 76.8
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 2.0e-233 812.4 507 80.3
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.9e-229 798.1 504 80.2
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 5.5e-223 777.7 557 70.6
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 9.0e-218 760.4 496 72.6
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 7.6e-217 757.3 496 73.2
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.8e-211 738.8 400 89.0
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 6.3e-211 737.6 499 71.9
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.4e-210 735.7 516 73.1
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.3e-205 719.9 496 70.0
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.5e-199 699.1 408 82.4
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 3.1e-186 655.6 345 89.9
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.3e-179 633.6 544 57.9
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 8.0e-174 614.4 470 62.6
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.4e-170 603.6 470 62.1
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.7e-168 596.7 365 79.2
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.9e-163 578.6 490 64.5
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 3.3e-143 512.7 323 79.3
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 8.9e-133 478.0 500 50.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.4e-130 470.7 322 76.1
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 6.0e-129 465.3 495 55.4
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.4e-125 454.1 555 45.6
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.3e-120 437.6 253 79.4
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 7.9e-113 411.8 548 43.4
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.5e-103 380.9 521 40.5
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.6e-102 377.5 214 85.5
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 4.1e-93 346.3 179 91.6
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.0e-88 331.6 263 66.9
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 8.8e-72 275.4 157 80.3
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.3e-64 250.8 158 78.5
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.4e-61 241.5 172 68.6
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 7.0e-45 186.0 100 88.0
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 4.7e-41 173.3 115 77.4
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.2e-33 148.7 99 74.7
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.1e-32 145.6 88 78.4
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 4.0e-24 117.1 76 80.3
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.9e-22 110.9 66 75.8
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.1e-21 109.0 65 75.4
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.4e-15 87.4 66 62.1
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.3e-14 85.5 94 53.2


User provided reference genes

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