Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 1.6e-194 682.6 349 100.0
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 5.2e-132 474.9 351 68.4
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 8.3e-130 467.6 355 67.6
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 1.6e-128 463.4 345 69.0
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 2.7e-128 462.6 342 65.5
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 1.0e-127 460.7 349 68.5
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 5.0e-127 458.4 354 68.1
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 7.2e-126 454.5 346 67.9
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 7.2e-126 454.5 346 67.9
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 5.2e-124 448.4 347 63.1
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 3.4e-123 445.7 345 67.2
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 7.5e-123 444.5 344 65.7
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.7e-122 443.4 352 66.5
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 7.0e-121 438.0 349 65.3
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 7.0e-121 438.0 357 64.4
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 9.2e-121 437.6 356 62.6
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 2.0e-120 436.4 346 65.3
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 2.7e-120 436.0 345 65.5
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 2.7e-120 436.0 349 64.2
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 3.5e-120 435.6 343 66.8
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 1.0e-119 434.1 350 66.6
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 1.0e-119 434.1 347 64.8
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 1.0e-119 434.1 348 65.8
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 1.3e-119 433.7 349 64.8
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 1.7e-119 433.3 348 64.1
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 1.7e-119 433.3 364 64.0
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 1.7e-119 433.3 346 65.3
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 2.3e-119 433.0 341 64.8
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 8.6e-119 431.0 345 63.5
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 1.5e-118 430.3 346 65.0
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 1.9e-118 429.9 352 64.2
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 2.5e-118 429.5 345 65.8
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 7.3e-118 427.9 343 62.4
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 9.5e-118 427.6 344 62.5
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 2.8e-117 426.0 343 63.6
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 3.6e-117 425.6 352 63.6
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 1.0e-116 424.1 360 62.8
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 1.4e-116 423.7 343 63.3
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 2.3e-116 422.9 359 62.1
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 2.3e-116 422.9 359 62.1
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 2.3e-116 422.9 349 60.7
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 3.0e-116 422.5 343 61.5
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 2.0e-115 419.9 342 64.6
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 2.6e-115 419.5 361 62.6
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 3.4e-115 419.1 359 61.3
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 3.4e-115 419.1 357 62.2
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 4.4e-115 418.7 359 61.0
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 2.2e-114 416.4 355 61.4
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 3.7e-114 415.6 353 62.6
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 3.7e-114 415.6 353 62.6
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 4.9e-114 415.2 358 60.6
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 6.4e-114 414.8 357 61.9
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 6.4e-114 414.8 357 62.5
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 1.1e-113 414.1 364 60.2
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 1.4e-113 413.7 346 61.3
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 2.4e-113 412.9 364 59.9
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 2.4e-113 412.9 352 61.4
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 3.2e-113 412.5 358 61.2
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 5.4e-113 411.8 350 61.7
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 7.0e-113 411.4 370 59.7
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 9.2e-113 411.0 362 59.7
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 2.0e-112 409.8 363 60.6
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 2.7e-112 409.5 349 59.9
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 3.5e-112 409.1 359 60.7
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 3.5e-112 409.1 350 60.9
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 5.9e-112 408.3 349 61.3
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 1.3e-111 407.1 347 60.8
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 3.9e-111 405.6 439 52.8
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 8.6e-111 404.4 346 61.3
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 8.6e-111 404.4 345 62.0
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 1.1e-110 404.1 349 59.0
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 1.9e-110 403.3 359 57.7
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.5e-110 402.9 345 62.0
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 9.5e-110 401.0 365 61.1
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 1.2e-109 400.6 342 61.7
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.6e-109 400.2 345 61.4
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 2.8e-109 399.4 345 61.4
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.4e-108 397.1 345 60.9
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.8e-108 396.7 343 62.4
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 4.0e-108 395.6 346 58.4
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 4.0e-108 395.6 454 49.8
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 6.8e-108 394.8 347 59.1
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 8.9e-108 394.4 345 59.1
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 4.9e-106 388.7 364 56.9
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 5.4e-105 385.2 431 49.2
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 7.0e-105 384.8 345 59.7
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 3.5e-104 382.5 345 60.0
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 1.6e-101 373.6 372 55.9
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 1.8e-100 370.2 321 60.4
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.0e-95 354.4 417 50.1
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 2.3e-92 343.2 346 55.2
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 2.3e-92 343.2 319 58.9
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 1.4e-89 334.0 307 58.0
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.2e-88 330.9 410 46.8
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 2.1e-88 330.1 210 73.8
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 7.8e-88 328.2 306 56.5
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 1.1e-86 324.3 248 64.1
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 9.0e-84 314.7 208 71.6
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 1.9e-78 297.0 315 51.1
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 8.4e-74 281.6 343 45.8
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 1.2e-72 277.7 208 65.9
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 2.3e-71 273.5 365 43.8
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 1.2e-67 261.2 173 69.9
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 3.8e-66 256.1 366 42.1
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 5.5e-65 252.3 147 79.6
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 4.6e-64 249.2 301 49.8
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.6e-61 240.7 144 75.7
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 8.2e-61 238.4 341 40.2
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 4.0e-60 236.1 189 58.7
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 2.2e-58 230.3 304 41.8
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 8.4e-58 228.4 138 75.4
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 1.2e-48 198.0 203 55.7
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.2e-48 198.0 346 36.1
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 1.8e-47 194.1 116 78.4
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 6.9e-44 182.2 212 53.3
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 2.0e-35 154.1 197 46.7
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 1.7e-29 134.4 90 73.3
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 2.2e-29 134.0 97 70.1
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 1.8e-28 131.0 186 37.6
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 9.1e-28 128.6 216 36.6
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 1.3e-26 124.8 129 52.7
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 5.3e-20 102.8 83 62.7
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 1.2e-19 101.7 65 72.3
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 4.5e-19 99.8 165 33.9
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 3.8e-18 96.7 86 61.6
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 3.8e-18 96.7 106 55.7
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 5.0e-18 96.3 139 44.6
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 5.0e-18 96.3 89 57.3
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 8.5e-18 95.5 183 36.1
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 1.6e-16 91.3 156 38.5
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 2.1e-16 90.9 91 53.8
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 3.6e-16 90.1 81 60.5
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 1.4e-15 88.2 81 59.3
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 1.8e-15 87.8 79 63.3
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 5.2e-15 86.3 85 57.6
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 8.8e-15 85.5 102 48.0
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 1.7e-13 81.3 45 82.2
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.7e-13 81.3 107 44.9
FvH4_4g05840 Fragaria vesca HOM05D005043 ORTHO05D006182 1.6e-11 74.7 167 37.7
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.6e-11 74.7 72 52.8
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 4.5e-11 73.2 187 34.8
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 7.7e-11 72.4 37 81.1
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 5.0e-10 69.7 220 27.3
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 5.0e-10 69.7 49 69.4
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 3.6e-08 63.5 47 59.6
PSO017G5465 Papaver somniferum HOM05D001448 ORTHO05D005781 5.2e-07 59.7 80 41.2
PSO063G1607 Papaver somniferum HOM05D001448 ORTHO05D005781 5.2e-07 59.7 80 41.2
RcHm_v2.0_Chr1g0352751 Rosa chinensis HOM05D005043 ORTHO05D006182 5.2e-07 59.7 41 58.5
HPP92_025971 Vanilla planifolia HOM05D001448 ORTHO05D005781 5.2e-07 59.7 83 41.0
Ciclev10018683m.g Citrus clementina HOM05D001448 ORTHO05D005781 8.9e-07 58.9 82 39.0
Lj2C1155G3 Lonicera japonica HOM05D001448 ORTHO05D005781 2.6e-06 57.4 76 42.1
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 3.4e-06 57.0 31 77.4
Rhsim01G0266300 Rhododendron simsii HOM05D001448 ORTHO05D005781 3.4e-06 57.0 80 40.0
Manes.05G087700 Manihot esculenta HOM05D001448 ORTHO05D005781 4.4e-06 56.6 81 40.7
Aqoxy5G00274 Aquilegia oxysepala HOM05D001448 ORTHO05D005781 5.7e-06 56.2 85 37.6
CBR_g1120 Chara braunii HOM05D001448 ORTHO05D005781 7.5e-06 55.8 77 44.2
THA.LOC104800882 Tarenaya hassleriana HOM05D001448 ORTHO05D005781 7.5e-06 55.8 105 36.2
Thhalv10016190m.g Eutrema salsugineum HOM05D001448 ORTHO05D005781 9.8e-06 55.5 80 38.8


User provided reference genes

Program Settings