Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1680.6 841 100.0
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1444.5 842 84.7
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1443.3 844 83.9
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1442.9 844 83.8
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1427.9 842 83.0
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1427.9 908 78.5
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1426.0 844 83.5
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1425.6 845 83.6
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1417.5 842 82.9
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1410.2 835 82.9
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1392.9 846 81.3
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1390.9 841 81.1
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1388.2 841 80.0
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1387.5 921 76.1
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 845 81.1
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1383.6 864 78.5
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 842 79.8
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1371.3 845 80.2
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 839 79.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1369.4 845 79.4
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1365.5 843 79.4
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1362.8 846 78.8
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1362.8 851 79.1
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1362.1 851 79.2
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1361.3 846 78.7
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1360.9 845 79.4
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 851 79.0
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 848 79.4
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1359.4 837 79.6
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1357.8 849 79.2
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1354.3 862 77.5
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1353.6 842 79.1
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1352.4 851 78.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 846 77.5
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1349.7 842 78.9
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1349.0 846 77.8
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 842 78.5
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 842 78.7
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1346.6 849 78.6
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1344.7 845 78.7
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1342.8 842 78.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1342.0 845 78.0
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1341.6 845 78.0
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1341.6 872 77.2
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1341.3 842 78.3
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 857 78.5
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1332.4 851 78.7
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1332.4 845 78.6
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1330.9 864 76.5
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1330.5 845 77.5
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1327.0 843 77.9
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1325.5 861 75.3
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1323.1 842 77.8
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1322.4 846 76.1
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1320.4 845 77.0
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1320.4 909 74.1
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1316.2 845 76.2
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 861 74.6
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 845 75.5
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 846 75.9
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1303.9 842 75.4
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1303.5 861 74.4
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1303.5 840 75.4
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 894 72.1
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 947 69.7
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1300.0 842 75.9
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1299.3 850 75.8
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1299.3 861 74.2
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1294.3 785 79.6
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 850 75.9
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1281.2 920 69.8
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1280.4 863 73.3
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1270.4 920 69.1
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1251.9 865 72.5
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1251.9 865 72.5
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1251.5 865 72.7
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1251.5 865 72.7
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1251.5 865 72.7
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1251.5 865 72.4
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1250.7 865 72.3
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1247.3 865 72.0
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1244.2 865 72.0
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1243.0 865 71.8
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1242.6 865 72.1
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1241.9 839 72.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1239.2 837 71.8
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1221.5 761 79.1
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1208.7 855 69.1
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1157.9 838 70.6
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1147.9 726 77.4
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1114.0 845 66.5
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1083.2 842 62.1
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 6.9e-311 1070.5 834 62.6
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 3.8e-306 1054.7 887 62.6
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.5e-305 1052.0 851 66.3
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 4.7e-296 1021.1 838 59.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.1e-292 1010.0 1141 52.1
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.6e-283 979.5 851 63.6
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.1e-276 955.3 696 71.0
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.6e-267 926.4 619 72.7
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.1e-265 920.2 725 67.7
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 5.8e-262 907.9 805 60.2
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 4.9e-229 798.5 602 66.8
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-226 790.0 685 62.2
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.3e-224 783.9 472 81.1
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.1e-203 713.4 405 84.0
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 6.1e-203 711.8 469 77.4
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.0e-197 692.2 433 80.1
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.3e-181 641.0 601 57.9
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 5.7e-177 625.5 843 41.0
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 6.5e-173 612.1 355 81.1
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.0e-171 605.1 369 83.5
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 9.5e-164 581.6 341 84.5
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 3.6e-163 579.7 856 39.3
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.4e-138 498.0 824 35.2
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.6e-123 448.0 1003 31.2
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.2e-119 433.7 430 54.4
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.2e-111 406.8 327 59.0
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.6e-110 403.3 377 60.7
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-106 391.3 593 42.8
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.9e-102 375.9 332 56.3
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.8e-96 357.1 260 66.2
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.2e-79 300.4 320 50.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 9.4e-79 299.3 238 65.1
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 5.1e-77 293.5 218 65.6
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.3e-75 288.9 165 83.6
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 3.8e-64 250.8 157 73.2
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 8.9e-45 186.4 97 89.7
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.0e-41 175.3 116 72.4
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-40 172.6 113 70.8
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 7.8e-33 146.7 85 82.4
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-32 146.4 150 49.3
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-32 144.4 96 76.0
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-32 144.1 93 78.5
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-31 142.5 87 78.2
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 2.5e-31 141.7 127 62.2
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-29 136.3 91 73.6
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-28 132.9 91 72.5
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.5e-28 132.5 185 48.1
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.5e-28 132.5 67 88.1
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 4.9e-27 127.5 80 71.2
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.7e-24 119.0 125 57.6
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-24 118.6 95 67.4
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 6.2e-22 110.5 96 63.5
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 8.9e-21 106.7 108 55.6
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 2.0e-20 105.5 96 61.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 9.9e-20 103.2 68 66.2
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-19 102.8 103 58.3
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 6.4e-19 100.5 52 88.5
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-18 99.0 52 86.5
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-18 97.1 61 67.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.2e-17 96.3 197 33.5
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 2.7e-17 95.1 96 56.2
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 3.9e-16 91.3 54 87.0
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-15 89.7 115 47.0
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 2.4e-13 82.0 78 59.0
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 3.1e-13 81.6 87 52.9
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 3.1e-13 81.6 87 52.9
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 8.9e-13 80.1 49 83.7
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 9.3e-10 70.1 37 91.9
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.3e-08 66.2 80 47.5
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 1.3e-08 66.2 87 48.3
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 5.6e-07 60.8 41 70.7
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 1.3e-06 59.7 76 48.7


User provided reference genes

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