Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 0.0e+00 3067.7 1534 100.0
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 0.0e+00 1954.9 1536 64.1
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 0.0e+00 1841.2 1530 60.5
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 0.0e+00 1825.8 1538 60.7
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 0.0e+00 1812.3 1543 59.6
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 0.0e+00 1790.4 1533 58.9
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 0.0e+00 1789.6 1619 56.8
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 0.0e+00 1775.8 1534 58.9
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 0.0e+00 1772.7 1536 58.6
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 0.0e+00 1772.3 1516 60.0
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 0.0e+00 1764.2 1502 59.3
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 0.0e+00 1749.6 1533 57.5
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 0.0e+00 1727.2 1537 57.2
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 0.0e+00 1726.5 1531 57.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 0.0e+00 1711.8 1530 57.3
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 0.0e+00 1703.3 1554 57.6
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 0.0e+00 1697.9 1533 57.0
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 0.0e+00 1682.2 1532 57.8
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 0.0e+00 1659.8 1540 56.4
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 0.0e+00 1649.0 1535 55.6
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 0.0e+00 1647.1 1550 55.9
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 0.0e+00 1643.6 1535 56.5
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1641.7 1396 60.2
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 0.0e+00 1641.7 1535 55.3
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1640.9 1538 55.6
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 0.0e+00 1625.1 1551 53.8
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 0.0e+00 1618.2 1537 54.7
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 0.0e+00 1611.7 1541 54.6
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 0.0e+00 1607.8 1536 53.9
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 0.0e+00 1602.0 1565 54.5
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 0.0e+00 1588.5 1547 53.8
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 0.0e+00 1585.5 1548 53.5
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 0.0e+00 1585.1 1464 55.4
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1582.0 1548 53.6
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 0.0e+00 1577.0 1540 53.7
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 0.0e+00 1571.6 1533 54.1
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 0.0e+00 1559.7 1533 52.3
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1553.1 1551 52.9
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 0.0e+00 1551.2 1531 52.4
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 0.0e+00 1550.8 1540 52.0
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 0.0e+00 1542.7 1542 52.0
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 0.0e+00 1538.5 1531 52.6
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 0.0e+00 1535.8 1544 52.3
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 0.0e+00 1526.9 1362 57.6
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 0.0e+00 1519.6 1536 52.7
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1517.7 1540 52.6
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 0.0e+00 1511.5 1631 50.0
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 0.0e+00 1510.4 1533 52.1
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 0.0e+00 1499.2 1474 53.5
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 0.0e+00 1478.8 1572 51.3
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 0.0e+00 1469.1 1540 49.9
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 0.0e+00 1461.8 1563 51.1
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 0.0e+00 1442.2 1533 50.1
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 0.0e+00 1441.0 1556 49.6
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 0.0e+00 1422.1 1530 49.5
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 0.0e+00 1406.3 1543 49.1
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 0.0e+00 1385.9 1562 47.8
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 0.0e+00 1377.5 1537 47.9
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 0.0e+00 1375.5 1534 47.8
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 0.0e+00 1375.5 1534 47.8
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 0.0e+00 1372.5 1161 60.1
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 0.0e+00 1370.1 1526 47.7
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 0.0e+00 1360.1 1540 48.2
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 0.0e+00 1342.0 1512 47.6
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 0.0e+00 1322.0 1530 46.8
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 0.0e+00 1321.6 1453 48.4
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 0.0e+00 1132.9 1535 40.8
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 0.0e+00 1105.1 1547 39.0
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 0.0e+00 1078.2 1235 47.3
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 3.5e-305 1052.4 1089 52.4
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.6e-302 1043.5 1078 51.2
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 3.6e-302 1042.3 954 57.1
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 1.4e-301 1040.4 937 59.6
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 1.9e-295 1020.0 1231 45.4
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 3.6e-286 989.2 1073 49.6
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 1.3e-267 927.5 843 57.2
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 1.1e-263 914.4 1266 41.5
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.4e-245 853.6 1105 45.1
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 3.5e-241 839.7 668 62.3
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 4.9e-235 819.3 972 48.3
TPR.G6035 Trifolium pratense HOM05D001734 ORTHO05D003483 4.9e-235 819.3 986 46.2
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 1.2e-225 788.1 1584 33.0
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 2.3e-216 757.3 605 62.0
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 8.2e-214 748.8 1596 31.5
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 3.1e-205 720.3 1546 34.7
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 5.0e-203 713.0 604 59.6
ATR0730G231 Amborella trichopoda HOM05D001734 ORTHO05D003483 1.2e-196 691.8 949 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 8.8e-192 675.6 1614 30.9
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 9.7e-191 672.2 1207 36.6
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 5.2e-184 649.8 473 66.2
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.0e-176 625.5 562 55.3
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 9.1e-165 585.9 617 49.6
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 1.9e-162 578.2 808 41.2
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 7.2e-162 576.2 807 41.1
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.8e-160 571.6 447 63.3
Lj9A448T39 Lonicera japonica HOM05D001734 ORTHO05D003483 1.3e-150 538.9 428 65.0
PSO732G0258 Papaver somniferum HOM05D001734 ORTHO05D003483 7.1e-141 506.5 384 65.1
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 1.9e-133 481.9 500 51.4
Hund02745 Selenicereus undatus HOM05D001734 ORTHO05D003483 6.0e-132 476.9 354 67.8
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 1.8e-128 465.3 1133 30.4
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla HOM05D001734 ORTHO05D003483 6.8e-128 463.4 507 49.1
TPR.G6095 Trifolium pratense HOM05D001734 ORTHO05D003483 4.4e-127 460.7 406 57.4
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 8.4e-126 456.4 370 62.2
ATR0730G017 Amborella trichopoda HOM05D001734 ORTHO05D003483 1.9e-122 445.3 451 49.7
Lalb_Chr08g0236521 Lupinus albus HOM05D001734 ORTHO05D003483 2.5e-122 444.9 391 58.8
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.9e-117 428.7 335 61.2
VMungo1309G2093 Vigna mungo HOM05D001734 ORTHO05D003483 1.7e-115 422.2 617 41.7
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 2.8e-113 414.8 355 60.3
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea HOM05D001734 ORTHO05D003483 6.4e-110 403.7 340 57.6
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 3.0e-107 394.8 477 45.5
Nitab4.5_0000984g0080 Nicotiana tabacum HOM05D001734 ORTHO05D003483 7.9e-100 370.2 330 57.6
CDE07G0247 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 2.4e-96 358.6 286 59.8
VMungo1309G1151 Vigna mungo HOM05D001734 ORTHO05D003483 5.1e-91 340.9 305 55.4
SEGI_17988 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 3.2e-85 321.6 322 51.2
Psat5g114800 Pisum sativum HOM05D001734 ORTHO05D003483 1.8e-83 315.8 290 54.1
Rhsim06G0125200 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.4e-77 296.2 254 59.1
CBR_g290 Chara braunii HOM05D001734 ORTHO05D003483 5.7e-74 284.3 469 32.4
SHI17017 Sapria himalayana HOM05D001734 ORTHO05D003483 8.2e-65 253.8 233 56.2
Solyc03g112950.4 Solanum lycopersicum HOM05D001734 ORTHO05D003483 7.7e-63 247.3 195 62.6
Rhsim02G0151200 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.4e-59 236.5 247 52.2
COL.COLO4_30229 Corchorus olitorius HOM05D001734 ORTHO05D003483 2.0e-55 222.6 223 55.6
TPR.G29226 Trifolium pratense HOM05D001734 ORTHO05D003483 1.2e-52 213.4 179 59.8
SEGI_29837 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 2.6e-50 205.7 235 42.1
Cpa.g.sc76.49 Carica papaya HOM05D001734 ORTHO05D003483 5.7e-50 204.5 285 42.8
HPP92_004868 Vanilla planifolia HOM05D001734 ORTHO05D003483 1.6e-47 196.4 341 33.7
SEGI_22749 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.2e-39 170.2 164 49.4
QL01p024072 Quercus lobata HOM05D001734 ORTHO05D020518 2.0e-39 169.5 693 24.8
SHI17001 Sapria himalayana HOM05D001734 ORTHO05D003483 3.5e-39 168.7 168 52.4
CSS0037969 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 4.6e-39 168.3 107 73.8
arahy.Tifrunner.gnm1.ann1.1I6Y5K Arachis hypogaea HOM05D001734 ORTHO05D003483 3.6e-36 158.7 114 63.2
Rhsim06G0125100 Rhododendron simsii HOM05D001734 ORTHO05D003483 1.3e-33 150.2 116 68.1
SEGI_30734 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 6.4e-33 147.9 126 54.8
CAN.G853.42 Capsicum annuum HOM05D001734 ORTHO05D003483 1.0e-30 140.6 125 56.8
CBR_g286 Chara braunii HOM05D000004 ORTHO05D000002 1.0e-30 140.6 234 35.9
arahy.Tifrunner.gnm1.ann1.EMU6Q2 Arachis hypogaea HOM05D001734 ORTHO05D003483 1.1e-29 137.1 116 59.5
arahy.Tifrunner.gnm1.ann1.BK2P93 Arachis hypogaea HOM05D001734 ORTHO05D003483 4.3e-29 135.2 190 42.6
SHI17018 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-28 131.3 131 51.1
Rhsim02G0102600 Rhododendron simsii HOM05D001734 ORTHO05D003483 8.9e-27 127.5 233 35.6
SHI17002 Sapria himalayana HOM05D001734 ORTHO05D003483 7.5e-26 124.4 151 43.0
TPR.G5903 Trifolium pratense HOM05D001734 ORTHO05D003483 1.9e-24 119.8 91 63.7
SHI17004 Sapria himalayana HOM05D001734 ORTHO05D020992 7.1e-24 117.9 81 63.0
TPR.G29227 Trifolium pratense HOM05D001734 ORTHO05D003483 2.7e-23 115.9 105 52.4
MD14G1180200 Malus domestica HOM05D001734 ORTHO05D003483 1.5e-21 110.2 94 59.6
Ca_05696_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 4.3e-21 108.6 185 37.3
Lalb_Chr08g0236511 Lupinus albus HOM05D001734 ORTHO05D003483 9.5e-21 107.5 79 64.6
SHI17005 Sapria himalayana HOM05D001734 ORTHO05D003483 3.1e-19 102.4 213 31.9
QL07p004594 Quercus lobata HOM05D001734 ORTHO05D020518 4.0e-19 102.1 185 38.9
SHI17003 Sapria himalayana HOM05D001734 ORTHO05D003483 1.9e-16 93.2 89 59.6
SEGI_06250 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 2.7e-15 89.4 99 42.4
TPR.G21158 Trifolium pratense HOM05D001734 ORTHO05D003483 1.3e-14 87.0 81 50.6
Cpa.g.sc76.53 Carica papaya HOM05D001734 ORTHO05D003483 2.3e-14 86.3 81 49.4
Sopen12g024730 Solanum pennellii HOM05D035692 ORTHO05D020992 3.0e-14 85.9 65 56.9
SHI17006 Sapria himalayana HOM05D001734 ORTHO05D020518 4.0e-11 75.5 136 36.8
QL07p004626 Quercus lobata HOM05D001734 ORTHO05D003483 6.9e-11 74.7 64 65.6
SEGI_28316 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 2.0e-10 73.2 96 38.5
TPR.G5917 Trifolium pratense HOM05D001734 ORTHO05D003483 4.2e-08 65.5 67 44.8
QL07p004610 Quercus lobata HOM05D001734 ORTHO05D020518 4.6e-07 62.0 134 38.1
Solyc07g150133.1 Solanum lycopersicum HOM05D001734 ORTHO05D020992 3.0e-06 59.3 62 43.5


User provided reference genes

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