Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.0e-131 473.4 241 100.0
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 6.6e-110 401.0 241 81.3
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.5e-109 399.8 241 82.6
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.5e-109 399.8 240 82.9
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.9e-109 399.4 241 80.9
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.9e-109 399.4 231 85.7
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 8.0e-108 394.0 241 79.7
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.4e-107 393.3 240 81.2
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.8e-107 392.9 241 80.1
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.3e-107 392.5 235 83.4
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 6.8e-107 391.0 241 79.7
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 2.6e-106 389.0 239 78.2
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 3.4e-106 388.7 241 79.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 4.4e-106 388.3 240 80.4
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 5.7e-106 387.9 241 79.3
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 7.5e-106 387.5 241 78.4
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 9.8e-106 387.1 241 80.5
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 2.2e-105 386.0 240 77.1
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.9e-105 384.8 241 78.4
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 4.9e-105 384.8 241 80.5
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.4e-104 382.5 241 78.8
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 3.2e-104 382.1 241 79.3
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 4.1e-104 381.7 241 80.1
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 7.0e-104 380.9 240 77.9
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 9.2e-104 380.6 241 78.8
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 9.2e-104 380.6 241 79.3
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 9.2e-104 380.6 241 78.0
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.2e-103 380.2 241 78.0
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.2e-103 380.2 241 78.8
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.2e-103 380.2 241 79.3
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.6e-103 379.8 241 78.8
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.6e-103 379.8 241 79.7
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.6e-103 379.8 241 77.6
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 2.0e-103 379.4 241 76.8
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 2.7e-103 379.0 241 78.8
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 3.5e-103 378.6 240 77.5
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 4.6e-103 378.3 242 78.1
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 5.9e-103 377.9 232 80.2
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 5.9e-103 377.9 232 79.7
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 5.9e-103 377.9 234 78.6
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.9e-103 377.9 240 77.9
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 7.8e-103 377.5 240 77.1
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.0e-102 377.1 239 77.8
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.0e-102 377.1 239 77.8
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-102 376.7 241 78.0
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 3.0e-102 375.6 236 78.8
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 3.0e-102 375.6 241 78.0
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.0e-102 375.6 232 79.3
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 3.9e-102 375.2 241 76.3
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 6.6e-102 374.4 234 78.2
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 8.6e-102 374.0 241 77.2
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.1e-101 373.6 274 71.2
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.9e-101 372.9 241 75.5
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.9e-101 372.9 241 77.2
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 2.5e-101 372.5 237 77.6
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.5e-101 372.5 260 73.1
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 5.6e-101 371.3 241 75.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.3e-101 370.9 232 78.4
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.2e-100 370.2 249 73.5
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.6e-100 369.8 232 78.9
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.6e-100 368.6 240 77.1
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 4.7e-100 368.2 239 76.6
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 4.7e-100 368.2 240 75.8
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.0e-100 367.5 222 83.3
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.0e-100 367.5 232 78.4
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.0e-99 367.1 241 75.9
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.4e-99 366.7 240 75.8
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.8e-99 366.3 239 75.3
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.8e-99 366.3 241 75.9
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 5.2e-99 364.8 241 75.1
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 6.8e-99 364.4 234 76.9
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.6e-98 362.5 241 75.5
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 9.8e-98 360.5 240 74.2
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.3e-97 360.1 239 74.9
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.9e-97 359.0 239 75.3
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 4.9e-97 358.2 212 83.0
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 6.4e-97 357.8 266 69.5
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 6.4e-97 357.8 241 73.9
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.9e-96 356.3 239 74.5
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.9e-96 356.3 239 74.5
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.9e-96 356.3 239 74.5
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 5.4e-96 354.8 228 77.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 7.0e-96 354.4 241 73.4
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 9.2e-96 354.0 213 82.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.2e-95 353.6 340 57.1
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.6e-95 353.2 236 75.0
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 6.0e-95 351.3 239 73.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 6.0e-95 351.3 240 74.2
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.6e-94 347.8 287 63.4
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.5e-93 345.9 239 70.7
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 4.3e-93 345.1 238 72.3
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 9.5e-93 344.0 239 70.7
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 9.5e-93 344.0 239 72.4
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.2e-92 343.6 283 64.0
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.1e-92 342.8 202 83.7
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 2.8e-92 342.4 211 79.6
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 8.1e-92 340.9 239 71.5
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 5.2e-91 338.2 199 82.9
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 4.4e-90 335.1 202 82.2
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 2.9e-89 332.4 241 71.0
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.9e-89 331.6 239 68.2
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 6.4e-89 331.3 242 69.8
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 3.9e-86 322.0 214 74.3
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.9e-85 319.7 210 75.2
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.3e-81 307.0 241 67.6
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.0e-78 297.4 176 80.1
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.1e-77 293.9 239 64.9
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.2e-76 290.4 190 74.2
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.3e-73 280.4 171 80.7
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.4e-72 276.9 167 79.6
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.6e-71 273.5 231 59.7
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 4.6e-71 271.9 229 58.5
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.3e-68 263.8 226 57.5
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.5e-61 240.4 149 78.5
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 5.6e-61 238.4 145 78.6
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 9.3e-56 221.1 133 81.2
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.1e-55 219.9 141 78.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.1e-55 219.9 141 78.0
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.1e-53 214.2 190 57.4
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.3e-52 210.7 223 47.5
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.3e-52 210.7 125 81.6
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.5e-50 203.8 182 61.0
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 7.6e-50 201.4 130 73.8
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 6.5e-49 198.4 170 61.2
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.2e-48 195.7 127 77.2
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-45 186.8 120 78.3
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.3e-45 186.0 121 76.0
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 4.3e-45 185.7 120 77.5
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 4.1e-43 179.1 239 44.8
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 4.1e-43 179.1 120 74.2
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 8.2e-36 154.8 143 59.4
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.0e-35 151.4 129 64.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 2.9e-33 146.4 81 88.9
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.5e-32 143.3 101 73.3
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 4.2e-32 142.5 121 62.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 2.1e-31 140.2 89 76.4
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.4e-30 137.5 184 42.4
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.8e-30 137.1 111 65.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 6.7e-30 135.2 85 72.9
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 1.1e-27 127.9 237 36.3
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.2e-25 120.2 150 39.3
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.9e-24 117.1 106 61.3
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.9e-24 117.1 91 61.5
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.9e-22 109.4 100 62.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 3.3e-21 106.3 51 96.1
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 7.4e-21 105.1 72 69.4
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.8e-19 100.5 183 30.6
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.5e-16 90.9 54 81.5
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.0e-14 83.2 62 66.1
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 2.2e-09 67.0 163 33.7
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.9e-09 66.6 36 86.1
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 3.6e-07 59.7 33 75.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 6.1e-07 58.9 30 86.7


User provided reference genes

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