Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2871.3 1489 100.0
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2328.5 1500 79.9
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2314.7 1496 79.1
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2309.6 1497 79.1
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2308.1 1490 79.5
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2292.7 1495 78.7
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2289.6 1495 78.5
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2288.5 1480 79.5
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2282.3 1501 77.5
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2281.5 1497 78.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2280.8 1495 78.5
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2280.4 1496 77.7
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2262.6 1537 75.7
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2262.3 1495 76.9
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2258.8 1497 77.2
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2258.0 1494 76.8
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2250.7 1495 76.9
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2248.4 1495 77.7
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2245.3 1498 76.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2242.6 1492 76.7
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2240.7 1500 76.3
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2240.3 1499 76.1
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2239.5 1550 75.3
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2235.7 1493 76.7
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2228.8 1498 75.4
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2206.4 1497 75.4
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2203.7 1495 75.8
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2198.7 1496 75.5
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2197.2 1565 73.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2193.3 1498 75.2
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2191.0 1534 73.5
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2189.5 1499 75.2
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2186.8 1488 75.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2183.3 1497 75.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2181.4 1495 75.3
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2177.1 1497 74.9
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2174.1 1497 74.6
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2169.0 1498 74.8
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2168.7 1498 74.3
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2161.7 1499 74.3
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2158.3 1499 73.8
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2157.9 1498 73.5
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2156.3 1499 73.9
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2155.9 1498 73.5
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2150.6 1498 73.4
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2149.0 1498 73.8
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2147.5 1496 73.8
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2145.2 1500 74.2
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2139.8 1499 73.4
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1498 72.8
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2130.9 1484 73.3
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2128.6 1493 73.1
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2124.7 1488 73.4
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2124.4 1453 75.4
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2123.6 1484 73.5
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2105.9 1483 72.8
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2105.5 1495 72.5
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2105.1 1498 72.0
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2090.8 1497 72.2
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2089.7 1492 72.3
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2078.9 1499 72.1
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2073.9 1497 71.1
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2070.8 1496 71.1
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2070.4 1486 71.4
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1471 72.4
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2055.4 1555 69.6
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2055.0 1489 71.1
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2045.4 1498 71.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2036.2 1305 80.9
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2020.4 1500 69.9
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2011.1 1490 70.1
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2010.3 1481 70.0
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2003.8 1493 70.2
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2000.7 1492 69.6
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1999.6 1490 69.4
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1989.5 1492 69.0
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1989.5 1490 69.1
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1984.5 1302 78.7
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1983.8 1490 69.1
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1981.1 1493 68.7
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1973.7 1492 68.7
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1973.7 1493 68.7
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1973.0 1502 68.6
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1970.7 1491 68.9
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1969.5 1487 68.9
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1966.0 1499 68.6
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1965.7 1503 68.2
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1965.7 1502 68.4
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1964.1 1501 68.4
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1959.9 1498 68.4
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1952.9 1502 67.8
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1952.9 1575 65.7
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1946.8 1275 78.3
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1929.1 1459 68.9
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1923.7 1307 76.9
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1919.4 1502 66.8
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1918.7 1306 76.1
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1903.3 1387 73.7
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1887.1 1443 69.1
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1874.0 1596 64.8
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1862.4 1220 78.9
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1856.6 1476 65.2
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1825.4 1487 64.0
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1791.2 1668 59.2
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1741.5 1372 67.0
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1730.7 1438 62.8
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1570.4 1514 55.2
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1563.9 1416 62.1
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1542.7 1523 54.4
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1537.3 988 78.3
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1444.9 1376 60.0
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1394.4 1376 58.0
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1393.3 1086 68.8
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1349.3 1218 58.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1302.3 1303 54.3
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1194.5 1275 54.9
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1119.8 738 79.1
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.0e-298 1030.8 848 62.6
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 8.6e-293 1011.1 751 68.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.1e-275 953.4 774 65.1
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 5.8e-265 918.7 922 58.0
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.2e-257 894.4 716 66.2
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.9e-237 826.2 579 70.1
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 6.9e-218 762.3 613 63.9
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.4e-202 711.4 599 64.4
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.3e-187 661.8 895 44.8
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.5e-175 620.9 363 80.4
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.7e-171 608.2 742 47.7
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 5.9e-169 599.7 442 74.2
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.5e-159 567.8 480 65.6
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.1e-149 534.3 477 59.1
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.8e-133 481.9 576 50.5
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.5e-113 414.5 772 37.2
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.0e-99 367.5 445 47.2
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.6e-97 361.3 218 86.2
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 6.1e-97 360.5 1587 27.1
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 5.9e-92 344.0 1776 24.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.6e-89 335.9 1613 26.1
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.6e-84 319.3 394 50.3
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 9.1e-77 293.5 218 67.4
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.2e-73 283.1 241 63.1
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.3e-72 278.9 230 63.9
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 7.5e-71 273.9 165 80.0
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.8e-70 271.9 195 69.7
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.1e-69 270.0 273 56.8
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 3.6e-65 255.0 155 72.3
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 2.9e-46 192.2 102 85.3
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.4e-45 189.1 1364 23.0
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.6e-44 186.4 190 53.7
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.3e-43 183.3 184 58.7
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.5e-42 179.9 223 52.9
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.1e-34 153.7 121 65.3
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 4.3e-34 151.8 130 56.9
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 6.2e-33 147.9 129 58.9
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.3e-27 130.2 101 69.3
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.3e-27 129.4 341 32.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 4.3e-26 125.2 104 62.5
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 3.6e-25 122.1 91 67.0
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 6.2e-25 121.3 56 91.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.9e-22 112.5 58 81.0
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 4.6e-20 105.1 66 75.8
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 8.1e-17 94.4 140 40.0
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 9.0e-16 90.9 70 62.9
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.2e-13 82.4 112 46.4
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.7e-12 79.3 53 69.8
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.7e-12 79.3 53 69.8
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 6.9e-08 64.7 34 79.4
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.6e-07 62.8 142 33.1
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.6e-07 62.8 142 31.7
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 9.9e-07 60.8 53 54.7
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 2.9e-06 59.3 54 57.4


User provided reference genes

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