Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1845.1 959 100.0
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1271.1 987 69.7
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1260.7 998 69.1
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1259.6 987 69.6
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1255.0 961 69.9
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1253.8 963 69.3
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1244.6 968 69.5
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1230.3 966 69.2
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1229.5 952 69.5
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1222.6 970 68.0
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1218.0 962 68.1
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1212.6 968 68.1
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1209.1 966 66.3
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1203.7 950 68.6
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1200.7 966 68.1
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1200.7 988 66.9
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1196.0 937 68.9
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1184.1 1049 63.3
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 0.0e+00 1183.3 1014 64.6
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1179.9 953 66.8
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1176.8 944 66.7
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1174.8 966 66.3
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1174.8 962 66.1
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1174.8 978 66.1
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 0.0e+00 1174.8 957 67.5
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1174.5 953 66.7
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1174.5 967 63.9
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1170.2 955 67.3
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 0.0e+00 1167.1 989 65.8
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 0.0e+00 1156.7 969 64.1
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1156.0 944 65.1
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 0.0e+00 1155.2 983 62.9
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 0.0e+00 1151.0 999 63.0
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 0.0e+00 1146.7 984 64.3
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1132.1 971 61.3
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1128.6 979 64.5
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1127.5 1013 61.7
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1125.2 965 63.9
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 0.0e+00 1124.4 946 65.0
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1123.2 946 65.4
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 0.0e+00 1120.1 984 62.5
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 0.0e+00 1119.8 1001 61.1
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 0.0e+00 1109.7 1007 60.7
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1104.7 956 64.2
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1102.8 961 63.5
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1093.6 943 63.7
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 0.0e+00 1088.9 1007 61.3
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1084.7 959 63.4
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1080.1 969 61.5
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 0.0e+00 1078.9 972 60.2
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1078.5 959 62.3
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1078.5 951 63.1
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1076.6 956 61.5
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1075.1 953 62.6
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 4.6e-311 1071.2 981 61.4
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 8.5e-310 1067.0 959 62.3
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 1.4e-309 1066.2 938 63.2
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 2.1e-308 1062.4 960 60.9
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 3.6e-308 1061.6 946 62.5
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 4.6e-308 1061.2 870 67.6
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 3.0e-307 1058.5 965 60.2
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 5.7e-306 1054.3 945 62.8
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.4e-304 1049.7 955 60.4
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.8e-304 1049.3 947 60.7
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 3.1e-304 1048.5 961 60.2
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 3.1e-304 1048.5 956 61.0
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 5.3e-304 1047.7 950 60.4
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 7.7e-303 1043.9 961 59.9
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.0e-302 1043.5 963 60.1
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 1.1e-301 1040.0 968 61.8
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.1e-301 1040.0 1002 58.8
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 2.1e-300 1035.8 944 60.4
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 1.4e-299 1033.1 951 61.2
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 5.7e-298 1027.7 954 58.8
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 2.8e-297 1025.4 962 59.7
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 2.4e-296 1022.3 957 60.1
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 5.3e-296 1021.1 944 60.6
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 3.1e-288 995.3 943 58.7
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 2.0e-287 992.6 956 58.1
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 1.0e-286 990.3 940 57.9
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 5.5e-285 984.6 942 58.0
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 3.0e-283 978.8 980 56.5
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 7.2e-277 957.6 962 55.4
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 4.2e-269 931.8 1016 53.4
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 6.6e-262 907.9 955 54.0
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 4.3e-261 905.2 982 53.7
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 2.9e-257 892.5 958 54.4
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 9.5e-253 877.5 885 55.5
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 3.6e-252 875.5 950 53.1
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 8.1e-252 874.4 950 52.9
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 4.0e-251 872.1 961 52.8
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.6e-250 869.4 956 52.6
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.6e-250 869.4 956 52.6
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 2.2e-249 866.3 947 52.7
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 2.4e-248 862.8 957 52.8
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 3.2e-248 862.4 832 56.2
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 1.2e-247 860.5 927 53.1
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 2.1e-247 859.8 956 52.0
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 2.1e-247 859.8 946 52.2
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 6.0e-247 858.2 927 53.0
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 9.6e-237 824.3 999 49.8
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 2.0e-234 816.6 772 56.5
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 9.3e-200 701.4 996 44.8
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 7.2e-176 622.1 603 59.5
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 8.0e-175 618.6 988 41.9
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 5.5e-160 569.3 507 61.7
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 4.0e-158 563.1 818 42.1
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 2.5e-136 490.7 564 47.2
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 4.0e-134 483.4 812 35.7
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 5.8e-125 453.0 477 53.7
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 7.1e-107 392.9 780 33.1
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 1.6e-98 365.2 989 29.4
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.2e-82 312.4 887 28.4
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 1.1e-70 272.7 327 49.2
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 1.1e-70 272.7 365 48.2
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 1.8e-70 271.9 536 38.8
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 3.6e-66 257.7 276 53.6
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.6e-53 215.7 172 65.1
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.7e-36 159.1 393 36.1
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.6e-24 118.6 67 79.1
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 5.4e-22 110.9 82 63.4
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 1.1e-17 96.7 128 49.2
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 2.2e-15 89.0 66 63.6
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 5.4e-14 84.3 90 48.9
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 1.2e-13 83.2 90 48.9
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.0e-12 80.1 158 33.5
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 3.0e-12 78.6 180 37.2
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 5.6e-11 74.3 96 44.8
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 9.5e-11 73.6 90 47.8
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 6.2e-10 70.9 37 83.8
AT4G29830 Arabidopsis thaliana HOM05D005151 ORTHO05D006322 2.4e-09 68.9 198 25.8
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 3.1e-09 68.6 202 27.2
AL7G22420 Arabidopsis lyrata HOM05D005151 ORTHO05D006322 4.0e-09 68.2 195 25.1
BcaC01g01191 Brassica carinata HOM05D005151 ORTHO05D006322 8.9e-09 67.0 198 25.3
A08p19540 Brassica napus HOM05D005151 ORTHO05D006322 1.2e-08 66.6 198 25.3
C03p89080 Brassica napus HOM05D005151 ORTHO05D006322 1.2e-08 66.6 198 25.3
BolC3t21221H Brassica oleracea HOM05D005151 ORTHO05D006322 1.2e-08 66.6 198 25.3
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 2.0e-08 65.9 202 26.7
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 2.6e-08 65.5 177 28.2
PSO210G7456 Papaver somniferum HOM05D005151 ORTHO05D006322 3.4e-08 65.1 198 26.8
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 4.4e-08 64.7 177 27.7
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 4.4e-08 64.7 202 26.7
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 5.8e-08 64.3 230 22.2
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 9.9e-08 63.5 202 27.2
Aa31LG1G20090 Aethionema arabicum HOM05D002511 ORTHO05D000709 1.3e-07 63.2 238 22.7
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 1.3e-07 63.2 205 27.8
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 1.7e-07 62.8 195 27.2
Sc09g0008330 Simmondsia chinensis HOM05D005151 ORTHO05D006322 1.7e-07 62.8 189 24.9
Gohir.D09G084800 Gossypium hirsutum HOM05D004669 ORTHO05D005767 2.2e-07 62.4 205 27.8
Gorai.006G100800 Gossypium raimondii HOM05D004669 ORTHO05D005767 2.2e-07 62.4 205 27.8
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 2.2e-07 62.4 204 26.5
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 2.9e-07 62.0 202 26.2
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 2.9e-07 62.0 174 29.9
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 3.8e-07 61.6 202 26.2
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 4.9e-07 61.2 186 23.1
COL.COLO4_12887 Corchorus olitorius HOM05D004669 ORTHO05D005767 4.9e-07 61.2 202 26.7
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 4.9e-07 61.2 120 34.2
AagrBONN_evm.TU.Sc2ySwM_344.2105 Anthoceros agrestis HOM05D005151 ORTHO05D006322 8.4e-07 60.5 193 23.8
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 8.4e-07 60.5 190 27.4
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 8.4e-07 60.5 202 26.2
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 8.4e-07 60.5 145 30.3
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 8.4e-07 60.5 169 29.6
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 8.4e-07 60.5 125 30.4
Cfa027165 Carpinus fangiana HOM05D003769 ORTHO05D006292 1.4e-06 59.7 162 27.2
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 2.4e-06 58.9 202 25.2
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 2.4e-06 58.9 202 25.2
BcaB01g05657 Brassica carinata HOM05D000467 ORTHO05D000379 2.4e-06 58.9 176 27.8
PGSC0003DMG400005691 Solanum tuberosum HOM05D004669 ORTHO05D005767 2.4e-06 58.9 153 29.4
TAR627G0037 Trochodendron aralioides HOM05D004669 ORTHO05D005767 2.4e-06 58.9 156 29.5
CANSAT56G1977 Cannabis sativa HOM05D004669 ORTHO05D005767 4.1e-06 58.2 145 30.3
Cre04.g227900 Chlamydomonas reinhardtii HOM05D014335 ORTHO05D015846 4.1e-06 58.2 113 30.1
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 4.1e-06 58.2 205 21.5
Dinv30566 Davidia involucrata HOM05D004669 ORTHO05D005767 5.4e-06 57.8 177 28.8
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 5.4e-06 57.8 171 25.1
GSVIVG01017243001 Vitis vinifera HOM05D004669 ORTHO05D005767 5.4e-06 57.8 145 29.0
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 7.1e-06 57.4 213 24.9
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 7.1e-06 57.4 177 27.1
Potri.003G060500 Populus trichocarpa HOM05D004669 ORTHO05D005767 7.1e-06 57.4 145 29.7
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 9.2e-06 57.0 186 24.7
PGR031G2027 Punica granatum HOM05D004669 ORTHO05D005767 9.2e-06 57.0 145 28.3
QL05p027590 Quercus lobata HOM05D004669 ORTHO05D005767 9.2e-06 57.0 145 29.7
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 9.2e-06 57.0 165 27.9
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 9.2e-06 57.0 146 27.4


User provided reference genes

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