Gene: AT4G29830

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G29830
  • Transcript Identifier AT4G29830.1
  • Gene Type Coding gene
  • Location Chr4 : 14597728-14599157 : positive

Gene Family Information

  • ID HOM05D005151
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G29830.1
  • symbol VIP3
  • Alias SKI8,A. thaliana homolog of yeast SKI8
  • full_name vernalization independence 3
  • uniprot Q9SZQ5

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description vernalization independence 3 (VIP3); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: histone H3-K4 methylation, histone H3-K36 methylation, negative regulation of flower development; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (TAIR:AT2G41500.1); Has 81424 Blast hits to 33679 proteins in 849 species: Archae - 94; Bacteria - 9736; Metazoa - 32144; Fungi - 18699; Plants - 10476; Viruses - 0; Other Eukaryotes - 10275 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009908
IEA
GOA Databaseflower development
GO:1904278
IGI
Gene Ontologypositive regulation of wax biosynthetic process1
GO:0016441
IMP
Gene Ontologyposttranscriptional gene silencing1
GO:0051568
IMP
Gene Ontologyhistone H3-K4 methylation2
GO:0010452
IMP
Gene Ontologyhistone H3-K36 methylation2
GO:0009910
IMP, IGI
Gene Ontologynegative regulation of flower development3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol5
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus6
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005886
HDA
Gene Ontologyplasma membrane7
GO:0016593
IDA
Gene OntologyCdc73/Paf1 complex6
GO:0080008
IPI
Gene OntologyCul4-RING E3 ubiquitin ligase complex4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR024977 Anaphase-promoting complex subunit 4, WD40 domain
IPR001680 WD40 repeat
Mapman id Description
15.3.5.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP3/SKI8
16.4.1.2.6.3 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.component SKI8/VIP3