Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g04920 Coffea canephora HOM05D006635 ORTHO05D008047 7.5e-147 523.9 270 100.0
Nitab4.5_0000302g0050 Nicotiana tabacum HOM05D006635 ORTHO05D008047 9.0e-92 340.9 272 70.2
Ciclev10005690m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.0e-90 337.4 259 69.9
Solyc06g053770.4 Solanum lycopersicum HOM05D006635 ORTHO05D008047 1.7e-90 336.7 265 70.2
Sopen06g018890 Solanum pennellii HOM05D006635 ORTHO05D008047 1.7e-90 336.7 264 70.8
Ciclev10005689m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.1e-89 334.0 261 68.2
Migut.G00439 Erythranthe guttata HOM05D006635 ORTHO05D008047 2.5e-89 332.8 266 68.0
Hma1.2p1_0650F.1_g195460 Hydrangea macrophylla HOM05D006635 ORTHO05D008047 4.2e-89 332.0 247 72.1
PGSC0003DMG400016282 Solanum tuberosum HOM05D006635 ORTHO05D008047 5.5e-89 331.6 263 70.0
CSS0008878 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 1.2e-88 330.5 271 67.2
arahy.Tifrunner.gnm1.ann1.P8HXAC Arachis hypogaea HOM05D006635 ORTHO05D008047 2.7e-88 329.3 267 64.8
arahy.Tifrunner.gnm1.ann1.20YP49 Arachis hypogaea HOM05D006635 ORTHO05D008047 7.9e-88 327.8 267 64.8
Haze_11307 Corylus avellana HOM05D006635 ORTHO05D008047 1.0e-87 327.4 270 67.0
MD13G1208000 Malus domestica HOM05D006635 ORTHO05D008047 1.8e-87 326.6 263 66.9
CAN.G118.6 Capsicum annuum HOM05D006635 ORTHO05D008047 2.3e-87 326.2 267 67.8
Dinv29905 Davidia involucrata HOM05D006635 ORTHO05D008047 2.3e-87 326.2 256 69.9
Haze_11310 Corylus avellana HOM05D006635 ORTHO05D008047 3.0e-87 325.9 270 66.7
Prupe.1G031500 Prunus persica HOM05D006635 ORTHO05D008047 3.9e-87 325.5 265 65.3
Actinidia08441 Actinidia chinensis HOM05D006635 ORTHO05D008047 2.5e-86 322.8 260 67.7
Oeu058885.1 Olea europaea HOM05D006635 ORTHO05D008047 7.4e-86 321.2 279 64.9
Ciclev10007171m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.3e-85 320.5 239 71.1
Eucgr.H03153 Eucalyptus grandis HOM05D006635 ORTHO05D008047 1.3e-85 320.5 263 66.2
RcHm_v2.0_Chr1g0323991 Rosa chinensis HOM05D006635 ORTHO05D008047 1.6e-85 320.1 264 66.3
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 2.2e-85 319.7 251 68.5
Aqoxy5G00314 Aquilegia oxysepala HOM05D006635 ORTHO05D008047 2.8e-85 319.3 264 65.5
CANSAT78G1035 Cannabis sativa HOM05D006635 ORTHO05D008047 3.7e-85 318.9 263 65.4
GSVIVG01018125001 Vitis vinifera HOM05D006635 ORTHO05D008047 6.3e-85 318.2 266 65.4
MSTRG.4101 Avicennia marina HOM05D006635 ORTHO05D008047 1.1e-84 317.4 217 73.3
Lj5g0017333 Lotus japonicus HOM05D006635 ORTHO05D008047 2.4e-84 316.2 266 64.3
Potri.010G075900 Populus trichocarpa HOM05D006635 ORTHO05D008047 3.1e-84 315.8 248 66.9
Lalb_Chr02g0150381 Lupinus albus HOM05D006635 ORTHO05D008047 6.9e-84 314.7 267 64.0
TWI53G1330 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 6.9e-84 314.7 264 65.2
TWI53G1448 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 6.9e-84 314.7 264 65.2
CiPaw.01G189900 Carya illinoinensis HOM05D006635 ORTHO05D008047 1.2e-83 313.9 260 67.3
Atru.chr4.2211 Acer truncatum HOM05D006635 ORTHO05D008047 1.0e-82 310.8 261 63.6
PSO832G2723 Papaver somniferum HOM05D006635 ORTHO05D008047 1.7e-82 310.1 265 61.5
Thecc.04G246700 Theobroma cacao HOM05D006635 ORTHO05D008047 1.7e-82 310.1 266 64.7
Gohir.D10G153800 Gossypium hirsutum HOM05D006635 ORTHO05D008047 2.9e-82 309.3 261 64.4
Gorai.011G171700 Gossypium raimondii HOM05D006635 ORTHO05D008047 2.9e-82 309.3 261 64.4
AUR62002251 Chenopodium quinoa HOM05D006635 ORTHO05D008047 3.8e-82 308.9 236 67.4
Nn1g02620 Nelumbo nucifera HOM05D006635 ORTHO05D008047 5.0e-82 308.5 290 60.7
Gohir.A10G113600 Gossypium hirsutum HOM05D006635 ORTHO05D008047 8.5e-82 307.8 261 64.4
PSO210G4915 Papaver somniferum HOM05D006635 ORTHO05D008047 8.5e-82 307.8 265 61.5
DCAR_027282 Daucus carota HOM05D006635 ORTHO05D008047 1.1e-81 307.4 259 67.2
FvH4_2g07190 Fragaria vesca HOM05D006635 ORTHO05D008047 1.4e-81 307.0 265 62.6
FAN24G3344 Fragaria x ananassa HOM05D006635 ORTHO05D008047 1.9e-81 306.6 265 62.6
Sc19g0003750 Simmondsia chinensis HOM05D006635 ORTHO05D008047 1.9e-81 306.6 262 61.8
Cpa.g.sc58.53 Carica papaya HOM05D006635 ORTHO05D008047 3.2e-81 305.8 224 70.5
Psat4g107880 Pisum sativum HOM05D006635 ORTHO05D008047 3.2e-81 305.8 266 62.4
Manes.15G037200 Manihot esculenta HOM05D006635 ORTHO05D008047 5.5e-81 305.1 265 64.5
Nitab4.5_0008721g0010 Nicotiana tabacum HOM05D006635 ORTHO05D008047 1.2e-80 303.9 264 65.5
FAN20G2319 Fragaria x ananassa HOM05D006635 ORTHO05D008047 1.6e-80 303.5 265 61.5
Ca_09839_v3 Cicer arietinum L. HOM05D006635 ORTHO05D008047 2.7e-80 302.8 264 62.1
Sc19g0005210 Simmondsia chinensis HOM05D006635 ORTHO05D008047 2.7e-80 302.8 262 61.5
Medtr1g075330 Medicago truncatula HOM05D006635 ORTHO05D008047 3.6e-80 302.4 272 59.6
COL.COLO4_15799 Corchorus olitorius HOM05D006635 ORTHO05D008047 7.9e-80 301.2 237 66.2
THA.LOC104808600 Tarenaya hassleriana HOM05D006635 ORTHO05D008047 8.8e-79 297.7 259 62.2
PGR004G0241 Punica granatum HOM05D006635 ORTHO05D008047 1.5e-78 297.0 264 62.1
Lj6A657T45 Lonicera japonica HOM05D006635 ORTHO05D008047 2.5e-78 296.2 256 63.3
Carub.0003s2327 Capsella rubella HOM05D006635 ORTHO05D008047 7.4e-78 294.7 260 61.2
Sp3g20780 Schrenkiella parvula HOM05D006635 ORTHO05D008047 7.4e-78 294.7 264 62.9
vmacro15410 Vaccinium macrocarpon HOM05D006635 ORTHO05D008047 7.4e-78 294.7 315 54.9
Peaxi162Scf00325g00713 Petunia axillaris HOM05D006635 ORTHO05D008047 9.7e-78 294.3 272 62.5
Sed0017322 Sechium edule HOM05D006635 ORTHO05D008047 1.3e-77 293.9 237 64.1
ECA240G1129 Erigeron canadensis HOM05D000856 ORTHO05D002253 1.7e-77 293.5 263 60.8
CsaV3_7G006710 Cucumis sativus L. HOM05D006635 ORTHO05D008047 6.3e-77 291.6 236 64.4
HanXRQChr13g0424511 Helianthus annuus HOM05D006635 ORTHO05D008047 1.1e-76 290.8 262 59.9
MELO3C018624.2 Cucumis melo HOM05D006635 ORTHO05D008047 1.4e-76 290.4 242 64.0
Ah.13g066120 Amaranthus hybridus HOM05D006635 ORTHO05D008047 4.1e-76 288.9 235 63.4
ClCG09G015590 Citrullus lanatus HOM05D006635 ORTHO05D008047 6.9e-76 288.1 246 63.8
AL3G37550 Arabidopsis lyrata HOM05D006635 ORTHO05D008047 1.2e-75 287.3 261 60.5
CARHR099010 Cardamine hirsuta HOM05D006635 ORTHO05D008047 2.6e-75 286.2 261 60.5
FAN27G3431 Fragaria x ananassa HOM05D006635 ORTHO05D008047 5.9e-75 285.0 291 56.0
HPP92_023529 Vanilla planifolia HOM05D006635 ORTHO05D008047 3.8e-74 282.3 263 58.9
AT3G23100 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 1.1e-73 280.8 232 63.4
Glyma.10G184800 Glycine max HOM05D006635 ORTHO05D008047 1.9e-73 280.0 265 58.1
Hund11856 Selenicereus undatus HOM05D006635 ORTHO05D008047 1.9e-73 280.0 262 60.3
BcaC09g49245 Brassica carinata HOM05D006635 ORTHO05D008047 5.5e-73 278.5 261 59.4
QL06p015844 Quercus lobata HOM05D006635 ORTHO05D008047 7.2e-73 278.1 359 49.0
Glyma.20G205600 Glycine max HOM05D006635 ORTHO05D008047 4.7e-72 275.4 255 58.8
Os03g0740800 Oryza sativa ssp. japonica HOM05D006635 ORTHO05D008047 4.7e-72 275.4 267 54.3
CDE04G0173 Ceratophyllum demersum HOM05D006635 ORTHO05D008047 6.1e-72 275.0 261 58.6
Phvul.007G125600 Phaseolus vulgaris HOM05D006635 ORTHO05D008047 1.4e-71 273.9 257 58.4
Duzib151G0047 Durio zibethinus HOM05D006635 ORTHO05D008047 3.7e-69 265.8 261 59.8
EL10Ac3g05891 Beta vulgaris HOM05D006635 ORTHO05D008047 2.4e-68 263.1 261 57.1
Zm00001eb056730 Zea mays HOM05D006635 ORTHO05D008047 7.0e-68 261.5 269 52.8
A01p31980 Brassica napus HOM05D006635 ORTHO05D008047 9.1e-68 261.2 211 62.1
BraA01t03324Z Brassica rapa HOM05D006635 ORTHO05D008047 9.1e-68 261.2 211 62.1
CSS0031458 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 2.0e-67 260.0 297 54.2
ATR0824G049 Amborella trichopoda HOM05D006635 ORTHO05D008047 2.6e-67 259.6 242 55.0
BcaB04g20471 Brassica carinata HOM05D006635 ORTHO05D008047 2.9e-66 256.1 260 55.0
VMungo0720G1578 Vigna mungo HOM05D006635 ORTHO05D008047 2.9e-66 256.1 266 54.5
BolC1t04048H Brassica oleracea HOM05D006635 ORTHO05D008047 4.0e-63 245.7 182 64.8
Thhalv10022194m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 2.0e-62 243.4 261 54.0
Aa31LG8G9580 Aethionema arabicum HOM05D006635 ORTHO05D008047 5.3e-60 235.3 288 50.0
Sabra10G0032800 Salix brachista HOM05D006635 ORTHO05D008047 4.5e-59 232.3 441 37.4
Lsat_1_v5_gn_3_122920 Lactuca sativa HOM05D006635 ORTHO05D008047 1.3e-58 230.7 229 57.6
MBI19_g38372_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 1.5e-54 217.2 269 50.2
PGR004G0922 Punica granatum HOM05D006635 ORTHO05D008047 1.1e-49 201.1 160 61.9
C01p40990 Brassica napus HOM05D006635 ORTHO05D008047 1.5e-49 200.7 141 65.2
PGR102G1543 Punica granatum HOM05D006635 ORTHO05D008047 8.8e-47 191.4 252 47.6
Mapoly0014s0074 Marchantia polymorpha HOM05D006635 ORTHO05D008047 7.5e-38 161.8 214 41.1
AUR62015462 Chenopodium quinoa HOM05D006635 ORTHO05D008047 7.8e-35 151.8 156 58.3
PGR083G1020 Punica granatum HOM05D006635 ORTHO05D008047 2.3e-34 150.2 265 41.9
AagrBONN_evm.TU.Sc2ySwM_228.5661 Anthoceros agrestis HOM05D006635 ORTHO05D008047 4.7e-32 142.5 221 40.7
TAR636G2119 Trochodendron aralioides HOM05D006635 ORTHO05D008047 1.2e-30 137.9 98 65.3
Ciclev10029925m.g Citrus clementina HOM05D006635 ORTHO05D008047 7.0e-28 128.6 141 48.9
TPR.G27195 Trifolium pratense HOM05D006635 ORTHO05D008047 7.0e-28 128.6 104 58.7
TAR636G0517 Trochodendron aralioides HOM05D006635 ORTHO05D008047 1.5e-25 120.9 125 63.2
Pp3c14_21160 Physcomitrium patens HOM05D006635 ORTHO05D008047 3.4e-22 109.8 232 31.0
Pp3c1_38430 Physcomitrium patens HOM05D006635 ORTHO05D008047 4.1e-20 102.8 238 30.3
AT1G61410 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 2.3e-18 97.1 128 53.9
Oeu058884.1 Olea europaea HOM05D001680 ORTHO05D001596 5.1e-18 95.9 95 62.1
MBI19_g44428_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 6.6e-18 95.5 131 44.3
SEGI_11171 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 3.3e-17 93.2 104 47.1
CBR_g33918 Chara braunii HOM05D006635 ORTHO05D008047 2.8e-16 90.1 173 38.2
SEGI_02340 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 1.3e-13 81.3 83 59.0
Thhalv10021924m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 5.4e-12 75.9 83 53.0
C01p40960 Brassica napus HOM05D006635 ORTHO05D008047 1.6e-11 74.3 95 50.5
Pp3c10_9830 Physcomitrium patens HOM05D000160 ORTHO05D000496 6.0e-11 72.4 163 30.1
C01p40970 Brassica napus HOM05D006635 ORTHO05D008047 1.0e-10 71.6 59 50.8
unitig_747.g21677 Utricularia gibba HOM05D006635 ORTHO05D008047 3.9e-10 69.7 250 30.4
Pp3c13_7410 Physcomitrium patens HOM05D000160 ORTHO05D000496 4.3e-09 66.2 162 30.2
Pp3c3_5070 Physcomitrium patens HOM05D000160 ORTHO05D000496 1.4e-07 61.2 171 26.9
FvH4_6g04370 Fragaria vesca HOM05D045458 ORTHO05D045905 7.6e-06 55.5 42 57.1


User provided reference genes

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