Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 2.8e-66 255.0 115 100.0
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 96.5
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 96.5
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 95.7
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 4.9e-63 244.2 115 93.9
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 94.8
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 94.8
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 94.8
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 93.9
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 94.8
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.9e-62 242.3 114 94.7
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 93.9
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 93.9
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 94.8
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.0
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.9
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 93.0
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 92.2
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 93.0
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 93.0
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 93.0
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 93.0
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 93.0
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 93.9
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 93.0
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 92.2
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 92.2
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 91.3
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 91.3
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 92.2
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 93.0
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 91.3
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 91.3
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 91.3
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 91.3
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 92.2
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 92.2
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 91.3
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 91.3
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 91.3
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 92.2
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 89.6
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 91.3
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 8.6e-60 233.4 114 89.5
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 89.6
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 89.6
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 88.7
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 89.6
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.9e-59 232.3 135 81.5
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 89.6
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.8
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 89.6
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 89.6
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.8
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 88.7
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.0
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.0
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.0
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 87.8
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.6e-58 228.0 134 79.9
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.0
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 88.7
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 87.8
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 86.1
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 86.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 87.0
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 85.2
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 86.1
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.8e-57 223.8 115 87.0
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 83.5
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 7.6e-56 220.3 105 94.3
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.2e-55 218.8 115 80.9
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 8.4e-55 216.9 112 86.6
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 8.4e-55 216.9 112 86.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.4e-54 215.3 115 80.0
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 9.3e-54 213.4 105 90.5
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 6.0e-53 210.7 115 81.7
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 6.0e-53 210.7 105 88.6
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.3e-52 209.5 113 80.5
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.3e-52 209.5 113 80.5
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 3.0e-52 208.4 105 86.7
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.1e-52 207.6 105 87.6
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 5.1e-52 207.6 128 78.1
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.5e-51 206.1 105 85.7
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 2.5e-51 205.3 105 84.8
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.5e-51 205.3 112 82.1
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 3.3e-51 204.9 114 78.1
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 2.8e-50 201.8 98 94.9
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 4.8e-50 201.1 115 77.4
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.8e-50 201.1 114 74.6
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 8.1e-50 200.3 112 77.7
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 8.1e-50 200.3 112 77.7
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 8.1e-50 200.3 112 77.7
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 9.0e-49 196.8 115 73.0
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 74.8
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.7e-47 192.6 115 72.2
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.1e-46 187.2 114 70.2
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 68.7
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.9e-44 181.4 114 68.4
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.1e-43 179.9 88 93.2
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.5e-43 179.5 115 67.8
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 3.3e-43 178.3 180 53.9
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 1.2e-40 169.9 88 87.5
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.2e-40 169.9 90 86.7
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.2e-40 169.9 84 92.9
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 2.0e-40 169.1 88 87.5
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 4.5e-40 167.9 115 69.6
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 7.6e-40 167.2 114 67.5
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 7.6e-40 167.2 93 81.7
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.3e-39 166.4 115 58.3
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 6.4e-39 164.1 80 91.2
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 8.4e-39 163.7 249 39.8
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 4.2e-38 161.4 80 88.8
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 7.1e-38 160.6 94 78.7
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 1.6e-37 159.5 81 85.2
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.6e-37 159.5 82 86.6
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 2.3e-36 155.6 80 83.8
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.3e-36 155.6 84 84.5
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 3.0e-36 155.2 79 84.8
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.0e-36 155.2 80 83.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 5.6e-35 151.0 77 88.3
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 5.6e-35 151.0 80 81.2
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 9.6e-35 150.2 81 79.0
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.4e-33 146.4 110 58.2
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.4e-33 146.4 81 79.0
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.1e-30 136.7 111 53.2
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.1e-25 120.2 61 83.6
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 1.4e-25 119.8 64 82.8
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 1.2e-21 106.7 114 45.6
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 2.1e-21 105.9 71 66.2
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.7e-21 105.5 56 83.9
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 4.6e-21 104.8 97 48.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.0e-20 103.6 113 44.2
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 6.7e-20 100.9 54 83.3
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 8.7e-20 100.5 113 46.0
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-17 93.2 49 81.6
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 6.9e-17 90.9 105 41.9
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.5e-16 89.7 117 38.5
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 4.5e-16 88.2 70 62.9
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 6.1e-13 77.8 105 39.0
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 1.3e-10 70.1 105 35.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.7e-10 69.7 40 77.5
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.2e-08 63.5 112 33.9
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.5e-08 63.2 112 32.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 3.4e-08 62.0 115 29.6
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.0e-07 60.5 113 26.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.2e-07 59.3 115 27.8
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 2.9e-07 58.9 88 35.2
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.1e-06 57.0 113 31.0
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.4e-06 56.6 115 27.0
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.5e-06 54.7 119 29.4


User provided reference genes

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