Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 0.0e+00 1487.2 763 100.0
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 5.3e-198 695.3 774 51.7
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 5.9e-197 691.8 775 50.6
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 5.9e-197 691.8 764 52.5
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 5.5e-195 685.3 809 50.8
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 7.2e-195 684.9 767 52.7
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 3.3e-192 676.0 765 52.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 5.9e-189 665.2 763 51.0
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.9e-187 660.2 763 49.9
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.2e-187 659.1 766 50.4
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 5.5e-187 658.7 761 51.2
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.6e-186 657.1 765 51.4
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 5.2e-185 652.1 767 49.2
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.2e-184 651.0 775 51.5
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 4.4e-184 649.0 776 48.7
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.2e-183 646.7 771 48.9
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.8e-183 646.4 765 49.2
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 1.1e-182 644.4 770 49.9
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.8e-182 643.7 767 49.3
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 2.4e-182 643.3 766 49.0
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 3.8e-180 636.0 769 49.3
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.5e-179 632.1 763 49.0
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 4.7e-178 629.0 764 47.9
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 1.0e-177 627.9 773 48.6
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 1.0e-177 627.9 766 48.8
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 5.2e-177 625.5 764 48.8
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 6.8e-177 625.2 779 48.4
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 8.8e-177 624.8 763 48.4
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.5e-176 624.0 778 48.3
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 7.5e-176 621.7 757 48.5
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 2.8e-175 619.8 779 47.4
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 8.3e-175 618.2 764 48.3
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.8e-174 617.1 731 50.3
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 3.1e-174 616.3 763 48.2
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.3e-172 610.1 778 47.6
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 2.9e-172 609.8 768 47.5
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.9e-171 607.1 761 47.2
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.5e-168 597.4 764 47.4
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.0e-168 597.0 787 46.0
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 4.4e-168 595.9 765 45.4
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.7e-168 595.5 762 47.2
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.3e-167 594.3 829 45.7
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 2.2e-167 593.6 767 47.5
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 5.4e-166 589.0 774 45.5
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 5.4e-166 589.0 768 46.7
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 7.0e-166 588.6 771 46.6
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.6e-165 587.4 765 47.3
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.6e-165 587.4 827 44.1
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 5.0e-164 582.4 751 47.3
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 4.7e-162 575.9 764 46.9
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.5e-160 570.9 778 45.4
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 7.5e-160 568.5 778 45.6
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.3e-159 567.8 768 46.1
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.4e-158 564.3 770 44.4
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.2e-157 561.2 769 45.1
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 3.5e-157 559.7 770 44.5
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 6.0e-157 558.9 769 45.3
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 1.2e-152 544.7 771 44.5
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 7.5e-152 542.0 767 44.3
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.4e-150 537.7 767 44.6
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 7.8e-149 531.9 780 43.7
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 2.3e-148 530.4 762 44.2
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.0e-148 530.0 762 43.2
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 3.0e-148 530.0 818 41.4
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 8.6e-148 528.5 762 43.7
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.6e-146 524.2 709 46.7
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.7e-146 522.7 767 43.3
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 4.0e-145 519.6 764 43.1
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 6.8e-145 518.8 768 43.1
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.2e-144 518.1 773 43.2
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 2.6e-144 516.9 771 42.8
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.6e-141 506.1 673 47.0
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 5.1e-140 502.7 786 42.0
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 6.6e-140 502.3 776 42.1
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 3.3e-139 500.0 768 41.3
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 4.3e-139 499.6 781 42.6
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.1e-137 495.0 875 39.4
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 3.1e-137 493.4 735 43.7
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 3.1e-137 493.4 826 40.9
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 4.0e-137 493.0 768 40.9
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.5e-136 491.1 810 39.6
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.4e-135 485.7 764 42.1
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 9.3e-134 481.9 776 40.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.2e-133 481.5 780 41.3
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 2.7e-133 480.3 758 42.3
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.3e-130 471.5 826 39.6
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.8e-130 470.3 826 39.5
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 5.8e-128 462.6 854 39.0
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.3e-127 461.5 851 38.8
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 1.1e-126 458.4 766 39.2
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 3.5e-125 453.4 860 39.3
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 4.6e-125 453.0 859 39.0
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.7e-124 448.7 826 38.6
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 3.0e-116 423.7 756 37.3
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.9e-115 421.0 728 40.0
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 4.3e-115 419.9 748 38.5
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 4.8e-114 416.4 849 37.8
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.7e-111 407.9 804 37.3
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.9e-110 404.4 456 52.0
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.1e-107 395.2 760 38.0
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 4.8e-106 389.8 770 37.7
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.6e-101 374.8 804 35.7
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 3.4e-96 357.1 647 39.3
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 1.8e-84 318.2 316 55.4
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 2.0e-83 314.7 773 32.7
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.3e-82 312.0 772 32.4
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.9e-79 300.8 768 31.2
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 3.0e-76 290.8 752 31.5
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.8e-68 265.0 674 32.9
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 3.0e-68 264.2 337 45.4
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.4e-65 255.4 769 30.6
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.4e-65 255.4 780 28.5
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.7e-63 248.4 274 52.2
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 1.1e-57 229.2 198 57.6
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 3.1e-57 227.6 908 27.6
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 4.0e-52 210.7 323 42.7
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.2e-49 201.1 744 29.4
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 3.0e-47 194.5 760 25.9
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 4.4e-43 180.6 127 71.7
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.7e-42 178.7 176 51.7
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.7e-42 178.7 176 51.7
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 8.9e-36 156.4 766 24.9
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.2e-35 156.0 181 46.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.9e-33 148.7 124 66.1
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 5.1e-31 140.6 589 25.5
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.2e-26 125.2 101 65.3
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.1e-25 122.9 82 73.2
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.1e-22 112.8 216 36.1
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 6.4e-18 97.1 96 52.1
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 2.3e-15 88.6 127 39.4
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 2.8e-13 81.6 100 44.0
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 1.2e-08 66.2 115 42.6
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 4.6e-08 64.3 156 36.5
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 4.6e-08 64.3 54 55.6


User provided reference genes

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