Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 2.3e-224 781.9 412 100.0
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 1.1e-152 543.9 402 74.4
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 1.5e-143 513.5 385 74.0
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 1.3e-142 510.4 387 72.6
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 5.0e-142 508.4 402 72.6
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 1.9e-141 506.5 382 72.0
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 1.2e-140 503.8 372 72.8
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 2.7e-140 502.7 378 73.3
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 6.1e-140 501.5 411 68.1
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 1.0e-139 500.7 386 69.7
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 3.0e-139 499.2 371 72.2
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 5.7e-138 495.0 376 71.5
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 7.5e-138 494.6 409 68.7
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 9.7e-138 494.2 399 67.2
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 1.3e-137 493.8 394 69.0
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 1.7e-137 493.4 426 65.0
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 4.8e-137 491.9 405 66.4
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 4.8e-137 491.9 394 67.3
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 4.8e-137 491.9 394 67.3
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 6.3e-137 491.5 380 70.8
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 1.1e-136 490.7 411 66.4
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 1.4e-136 490.3 379 69.9
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.8e-136 490.0 381 68.2
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 5.3e-136 488.4 387 66.9
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 5.3e-136 488.4 381 68.2
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 9.1e-136 487.6 382 72.3
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 1.2e-135 487.3 394 65.7
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 1.2e-135 487.3 392 68.6
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 2.6e-135 486.1 392 66.8
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 5.9e-135 485.0 399 67.7
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 7.7e-135 484.6 398 66.3
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.7e-134 483.4 396 67.4
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 2.9e-134 482.6 404 65.3
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 8.5e-134 481.1 388 69.8
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 2.5e-133 479.6 397 65.5
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 5.5e-133 478.4 397 65.0
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 7.2e-133 478.0 393 68.2
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 2.1e-132 476.5 404 62.6
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 3.6e-132 475.7 381 66.9
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 3.6e-132 475.7 374 68.2
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 8.0e-132 474.6 383 71.0
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 1.4e-131 473.8 389 67.4
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 3.0e-131 472.6 397 65.0
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 4.0e-131 472.2 381 70.3
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 5.2e-131 471.9 385 66.8
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 6.8e-131 471.5 386 65.3
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 8.8e-131 471.1 378 68.5
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 1.2e-130 470.7 376 69.7
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 9.8e-130 467.6 389 67.1
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 2.8e-129 466.1 390 65.4
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 2.8e-129 466.1 378 71.4
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 8.3e-129 464.5 392 67.6
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 1.1e-128 464.2 445 62.7
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 4.1e-128 462.2 396 67.2
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 9.1e-128 461.1 394 64.5
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.2e-127 460.7 332 72.9
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 2.7e-127 459.5 364 70.1
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 1.7e-126 456.8 391 66.5
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 8.5e-126 454.5 406 63.5
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 8.5e-126 454.5 411 62.0
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 9.4e-125 451.1 403 63.8
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 8.0e-124 448.0 414 62.6
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 1.0e-123 447.6 399 64.4
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 2.3e-123 446.4 392 60.7
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 2.3e-123 446.4 392 60.7
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 4.0e-123 445.7 392 60.5
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 2.0e-122 443.4 407 61.9
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 2.0e-122 443.4 407 61.9
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 2.2e-121 439.9 395 63.3
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 4.9e-121 438.7 397 59.9
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 8.3e-121 438.0 430 58.4
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 8.3e-121 438.0 383 62.4
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.4e-120 437.2 392 62.8
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 3.1e-120 436.0 292 75.3
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 4.1e-120 435.6 404 59.2
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 7.7e-119 431.4 403 60.0
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 1.7e-118 430.3 277 77.6
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 9.5e-117 424.5 394 61.2
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 1.6e-116 423.7 373 61.9
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 3.4e-114 416.0 290 73.8
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 1.7e-113 413.7 392 57.7
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.7e-113 413.7 290 73.4
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 8.3e-113 411.4 259 79.5
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 4.3e-109 399.1 422 57.8
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 7.3e-109 398.3 307 70.0
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 1.6e-108 397.1 285 73.3
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 2.8e-108 396.4 291 71.1
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 3.6e-108 396.0 386 60.4
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 1.5e-106 390.6 310 68.1
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 2.0e-106 390.2 281 71.9
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 1.7e-105 387.1 405 57.3
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 1.7e-105 387.1 392 60.7
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 3.2e-104 382.9 302 67.5
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 1.3e-102 377.5 280 68.6
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 1.7e-94 350.5 281 68.7
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 6.6e-94 348.6 408 53.4
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 3.3e-93 346.3 254 70.9
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 7.3e-93 345.1 426 48.4
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 8.1e-92 341.7 264 64.0
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 1.5e-90 337.4 199 80.4
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 2.2e-89 333.6 422 50.2
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 3.7e-89 332.8 248 72.2
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 6.4e-89 332.0 388 53.9
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.0e-86 324.7 198 82.3
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 4.3e-85 319.3 407 47.2
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.6e-84 317.4 327 55.7
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 4.9e-81 305.8 253 64.0
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 3.3e-69 266.5 140 90.7
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 3.1e-67 260.0 157 79.6
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 2.9e-65 253.4 271 51.3
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 1.3e-62 244.6 220 54.5
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 3.9e-62 243.0 257 54.9
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.6e-60 237.7 315 49.5
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 2.6e-42 177.2 187 46.0
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 6.1e-39 166.0 321 33.6
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 5.0e-33 146.4 155 56.8
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 7.9e-31 139.0 194 36.6
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 1.7e-28 131.3 163 48.5
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 1.7e-20 104.8 82 67.1
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 1.1e-11 75.5 159 32.7
Cpa.g.sc48.16 Carica papaya HOM05D006305 ORTHO05D007984 3.5e-10 70.5 99 45.5
MBI04_g33407_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 5.5e-08 63.2 134 39.6
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 2.1e-07 61.2 34 79.4


User provided reference genes

Program Settings