Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31460 Coffea canephora HOM05D002728 ORTHO05D002874 6.3e-54 213.8 102 100.0
Cc11_g04580 Coffea canephora HOM05D002728 ORTHO05D002874 2.7e-49 198.4 102 95.1
Cc06_g06720 Coffea canephora HOM05D002728 ORTHO05D002874 1.5e-42 176.0 85 97.6
MSTRG.19298 Avicennia marina HOM05D002728 ORTHO05D002874 4.0e-24 114.8 83 59.0
Migut.J00687 Erythranthe guttata HOM05D002728 ORTHO05D002874 1.5e-23 112.8 85 58.8
CAN.G674.8 Capsicum annuum HOM05D002728 ORTHO05D002874 9.8e-23 110.2 85 60.0
Dinv41242 Davidia involucrata HOM05D002728 ORTHO05D002874 9.8e-23 110.2 85 55.3
Nitab4.5_0002165g0040 Nicotiana tabacum HOM05D002728 ORTHO05D002874 1.3e-22 109.8 85 58.8
Peaxi162Scf00083g01924 Petunia axillaris HOM05D002728 ORTHO05D002874 1.3e-22 109.8 85 57.6
Oeu028651.1 Olea europaea HOM05D002728 ORTHO05D002874 3.7e-22 108.2 84 57.1
SGA_v2.0_scaffold13G06659 Striga asiatica HOM05D002728 ORTHO05D002874 6.3e-22 107.5 86 57.0
Dinv42718 Davidia involucrata HOM05D002728 ORTHO05D002874 8.3e-22 107.1 86 57.0
Nitab4.5_0005257g0030 Nicotiana tabacum HOM05D002728 ORTHO05D002874 8.3e-22 107.1 85 57.6
Solyc10g081830.3 Solanum lycopersicum HOM05D002728 ORTHO05D002874 8.3e-22 107.1 85 58.8
Dinv43383 Davidia involucrata HOM05D002728 ORTHO05D002874 1.1e-21 106.7 85 56.5
PGSC0003DMG400028143 Solanum tuberosum HOM05D002728 ORTHO05D002874 1.4e-21 106.3 85 57.6
Hma1.2p1_0155F.1_g068590 Hydrangea macrophylla HOM05D002728 ORTHO05D002874 2.4e-21 105.5 85 51.8
Sopen10g032350 Solanum pennellii HOM05D002728 ORTHO05D002874 1.6e-20 102.8 85 58.8
CiPaw.07G192700 Carya illinoinensis HOM05D002728 ORTHO05D002874 2.7e-20 102.1 83 55.4
Actinidia17316 Actinidia chinensis HOM05D002728 ORTHO05D002874 7.8e-20 100.5 91 51.6
Actinidia38632 Actinidia chinensis HOM05D002728 ORTHO05D002874 1.0e-19 100.1 95 47.4
CSS0050130 Camellia sinensis var. sinensis HOM05D002728 ORTHO05D002874 1.3e-19 99.8 85 50.6
GSVIVG01029218001 Vitis vinifera HOM05D002728 ORTHO05D002874 8.6e-19 97.1 85 56.5
Nn8g38588 Nelumbo nucifera HOM05D002728 ORTHO05D002874 1.1e-18 96.7 87 52.9
Sed0008387 Sechium edule HOM05D002728 ORTHO05D002874 1.1e-18 96.7 83 57.8
MELO3C017458.2 Cucumis melo HOM05D002728 ORTHO05D002874 4.3e-18 94.7 88 51.1
Thecc.09G176600 Theobroma cacao HOM05D002728 ORTHO05D002874 5.6e-18 94.4 87 51.7
Cfa013500 Carpinus fangiana HOM05D002728 ORTHO05D002874 1.6e-17 92.8 83 51.8
Duzib150G0666 Durio zibethinus HOM05D002728 ORTHO05D002874 2.8e-17 92.0 86 54.7
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 2.8e-17 92.0 85 52.9
Haze_22088 Corylus avellana HOM05D002728 ORTHO05D002874 3.6e-17 91.7 83 51.8
HanXRQChr12g0365421 Helianthus annuus HOM05D002728 ORTHO05D002874 3.6e-17 91.7 83 48.2
ClCG06G013390 Citrullus lanatus HOM05D002728 ORTHO05D002874 6.1e-17 90.9 83 51.8
Lsat_1_v5_gn_8_67780 Lactuca sativa HOM05D002728 ORTHO05D002874 1.4e-16 89.7 88 50.0
CsaV3_1G031640 Cucumis sativus L. HOM05D002728 ORTHO05D002874 2.3e-16 89.0 84 51.2
COL.COLO4_37720 Corchorus olitorius HOM05D002728 ORTHO05D002874 1.2e-15 86.7 90 46.7
QL02p097865 Quercus lobata HOM05D002728 ORTHO05D002874 1.5e-15 86.3 85 50.6
ECA236G0567 Erigeron canadensis HOM05D002728 ORTHO05D002874 2.0e-15 85.9 85 43.5
Peaxi162Scf00231g00728 Petunia axillaris HOM05D002728 ORTHO05D002874 3.4e-15 85.1 86 48.8
vmacro06011 Vaccinium macrocarpon HOM05D002728 ORTHO05D002874 3.4e-15 85.1 88 46.6
Ca_21231_v3 Cicer arietinum L. HOM05D002728 ORTHO05D002874 4.4e-15 84.7 86 47.7
Psat5g275120 Pisum sativum HOM05D002728 ORTHO05D002874 9.8e-15 83.6 86 52.3
Hma1.2p1_1025F.1_g249360 Hydrangea macrophylla HOM05D002728 ORTHO05D002874 1.3e-14 83.2 86 46.5
Manes.06G023550 Manihot esculenta HOM05D002728 ORTHO05D002874 1.3e-14 83.2 85 44.7
TAR383G0981 Trochodendron aralioides HOM05D002728 ORTHO05D002874 1.3e-14 83.2 86 44.2
Ah.14g083770 Amaranthus hybridus HOM05D002728 ORTHO05D002874 2.2e-14 82.4 85 45.9
TPR.G5425 Trifolium pratense HOM05D002728 ORTHO05D002874 2.2e-14 82.4 85 48.2
Sc08g0005300 Simmondsia chinensis HOM05D002728 ORTHO05D002874 2.9e-14 82.0 85 47.1
MD15G1109200 Malus domestica HOM05D002728 ORTHO05D002874 3.7e-14 81.6 87 46.0
Rhsim03G0264700 Rhododendron simsii HOM05D002728 ORTHO05D002874 4.9e-14 81.3 90 45.6
Sabra18G0078800 Salix brachista HOM05D002728 ORTHO05D002874 4.9e-14 81.3 88 46.6
Medtr4g127950 Medicago truncatula HOM05D002728 ORTHO05D002874 6.4e-14 80.9 96 42.7
Oeu009852.1 Olea europaea HOM05D002728 ORTHO05D002874 6.4e-14 80.9 83 44.6
Solyc07g018300.3 Solanum lycopersicum HOM05D002728 ORTHO05D002874 6.4e-14 80.9 86 45.3
Sopen07g007450 Solanum pennellii HOM05D002728 ORTHO05D002874 8.3e-14 80.5 86 45.3
Cpa.g.sc233.2 Carica papaya HOM05D002728 ORTHO05D002874 1.1e-13 80.1 81 45.7
Sp3g01980 Schrenkiella parvula HOM05D002728 ORTHO05D002874 1.1e-13 80.1 85 45.9
Actinidia14753 Actinidia chinensis HOM05D002728 ORTHO05D002874 1.4e-13 79.7 101 44.6
Prupe.1G461400 Prunus persica HOM05D002728 ORTHO05D002874 1.8e-13 79.3 87 43.7
Dinv09620 Davidia involucrata HOM05D002728 ORTHO05D002874 2.4e-13 79.0 89 44.9
PGSC0003DMG403013782 Solanum tuberosum HOM05D002728 ORTHO05D002874 2.4e-13 79.0 86 44.2
Cc06_g13200 Coffea canephora HOM05D002728 ORTHO05D002874 4.1e-13 78.2 83 39.8
MD08G1131600 Malus domestica HOM05D002728 ORTHO05D002874 4.1e-13 78.2 91 44.0
PGR044G1401 Punica granatum HOM05D002728 ORTHO05D002874 4.1e-13 78.2 85 45.9
THA.LOC104802929 Tarenaya hassleriana HOM05D002728 ORTHO05D002874 4.1e-13 78.2 85 45.9
Gorai.009G068800 Gossypium raimondii HOM05D002728 ORTHO05D002874 5.4e-13 77.8 87 42.5
Phvul.003G145200 Phaseolus vulgaris HOM05D002728 ORTHO05D002874 7.0e-13 77.4 87 43.7
Hund26344 Selenicereus undatus HOM05D002728 ORTHO05D002874 9.2e-13 77.0 85 44.7
Gohir.D05G005100 Gossypium hirsutum HOM05D002728 ORTHO05D002874 1.6e-12 76.3 93 40.9
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 2.0e-12 75.9 91 44.0
Oeu017717.1 Olea europaea HOM05D002728 ORTHO05D002874 2.0e-12 75.9 98 39.8
DCAR_020125 Daucus carota HOM05D002728 ORTHO05D010830 2.7e-12 75.5 89 42.7
arahy.Tifrunner.gnm1.ann1.59XDTJ Arachis hypogaea HOM05D002728 ORTHO05D002874 3.5e-12 75.1 83 47.0
AUR62021305 Chenopodium quinoa HOM05D002728 ORTHO05D002874 3.5e-12 75.1 89 40.4
Glyma.13G096800 Glycine max HOM05D002728 ORTHO05D002874 3.5e-12 75.1 89 47.2
Gohir.D05G068000 Gossypium hirsutum HOM05D002728 ORTHO05D002874 3.5e-12 75.1 87 41.4
BNapus_Darmor_BZH_scaffold_129p00170 Brassica napus HOM05D002728 ORTHO05D002874 4.6e-12 74.7 84 41.7
BraA01t04606Z Brassica rapa HOM05D002728 ORTHO05D002874 4.6e-12 74.7 84 41.7
Gohir.A05G065400 Gossypium hirsutum HOM05D002728 ORTHO05D002874 4.6e-12 74.7 87 42.5
Gorai.009G005000 Gossypium raimondii HOM05D002728 ORTHO05D002874 4.6e-12 74.7 93 39.8
Lj4g0022723 Lotus japonicus HOM05D002728 ORTHO05D002874 4.6e-12 74.7 89 47.2
TWI63G0385 Tripterygium wilfordii HOM05D002728 ORTHO05D002874 6.0e-12 74.3 85 38.8
BcaNung03547 Brassica carinata HOM05D002728 ORTHO05D002874 7.8e-12 73.9 84 41.7
Carub.0003s0205 Capsella rubella HOM05D002728 ORTHO05D002874 7.8e-12 73.9 91 41.8
Gohir.A13G178000 Gossypium hirsutum HOM05D002728 ORTHO05D002874 7.8e-12 73.9 88 38.6
TWI32G1170 Tripterygium wilfordii HOM05D002728 ORTHO05D002874 7.8e-12 73.9 86 50.0
Aa31LG5G13420 Aethionema arabicum HOM05D002728 ORTHO05D002874 1.0e-11 73.6 85 40.0
Duzib168G0477 Durio zibethinus HOM05D002728 ORTHO05D002874 1.0e-11 73.6 87 40.2
Nitab4.5_0006838g0010 Nicotiana tabacum HOM05D002728 ORTHO05D002874 1.0e-11 73.6 95 42.1
MSTRG.6224 Avicennia marina HOM05D002728 ORTHO05D002874 1.3e-11 73.2 80 46.2
EL10Ac8g18289 Beta vulgaris HOM05D002728 ORTHO05D002874 1.3e-11 73.2 89 39.3
arahy.Tifrunner.gnm1.ann1.7IT8A8 Arachis hypogaea HOM05D002728 ORTHO05D002874 2.3e-11 72.4 83 45.8
Lalb_Chr07g0180521 Lupinus albus HOM05D002728 ORTHO05D002874 2.3e-11 72.4 85 47.1
Potri.018G091700 Populus trichocarpa HOM05D002728 ORTHO05D002874 2.3e-11 72.4 85 45.9
CSS0047734 Camellia sinensis var. sinensis HOM05D002728 ORTHO05D002874 3.0e-11 72.0 87 42.5
BolC1t05863H Brassica oleracea HOM05D002728 ORTHO05D002874 3.9e-11 71.6 84 40.5
COL.COLO4_19047 Corchorus olitorius HOM05D002728 ORTHO05D002874 5.0e-11 71.2 87 41.4
Gohir.D13G186100 Gossypium hirsutum HOM05D002728 ORTHO05D002874 5.0e-11 71.2 88 37.5
Gorai.013G212100 Gossypium raimondii HOM05D002728 ORTHO05D002874 5.0e-11 71.2 88 37.5
Psat0s312g0040 Pisum sativum HOM05D002728 ORTHO05D002874 5.0e-11 71.2 82 48.8
Rhsim07G0137300 Rhododendron simsii HOM05D002728 ORTHO05D002874 5.0e-11 71.2 83 38.6
VMungo1215G1050 Vigna mungo HOM05D002728 ORTHO05D002874 5.0e-11 71.2 87 42.5
MD13G1252800 Malus domestica HOM05D002728 ORTHO05D002874 6.6e-11 70.9 85 41.2
Atru.chr7.2627 Acer truncatum HOM05D002728 ORTHO05D002874 8.6e-11 70.5 88 39.8
Glyma.17G062700 Glycine max HOM05D002728 ORTHO05D002874 8.6e-11 70.5 88 45.5
Nitab4.5_0004944g0050 Nicotiana tabacum HOM05D002728 ORTHO05D002874 8.6e-11 70.5 88 40.9
Actinidia18150 Actinidia chinensis HOM05D002728 ORTHO05D002874 1.1e-10 70.1 88 46.6
Prupe.1G085000 Prunus persica HOM05D002728 ORTHO05D002874 1.1e-10 70.1 85 42.4
SGA_v2.0_scaffold66G22411 Striga asiatica HOM05D002728 ORTHO05D002874 1.5e-10 69.7 85 40.0
AL3G12370 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 1.9e-10 69.3 85 40.0
Migut.J01489 Erythranthe guttata HOM05D002728 ORTHO05D002874 1.9e-10 69.3 85 41.2
Thhalv10021296m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 1.9e-10 69.3 85 42.4
SGA_v2.0_scaffold34G13883 Striga asiatica HOM05D002508 ORTHO05D401873 1.9e-10 69.3 67 46.3
Atru.chr7.608 Acer truncatum HOM05D002728 ORTHO05D002874 2.5e-10 68.9 85 40.0
Potri.006G275700 Populus trichocarpa HOM05D002728 ORTHO05D002874 2.5e-10 68.9 81 44.4
vmacro14225 Vaccinium macrocarpon HOM05D002728 ORTHO05D002874 2.5e-10 68.9 89 41.6
Eucgr.C02332 Eucalyptus grandis HOM05D002728 ORTHO05D002874 3.3e-10 68.6 82 41.5
BcaB04g21396 Brassica carinata HOM05D002728 ORTHO05D002874 5.6e-10 67.8 85 40.0
AT3G02920 Arabidopsis thaliana HOM05D002728 ORTHO05D002874 7.3e-10 67.4 85 38.8
Gohir.A05G004300 Gossypium hirsutum HOM05D002728 ORTHO05D002874 7.3e-10 67.4 94 34.0
Manes.03G002500 Manihot esculenta HOM05D002728 ORTHO05D002874 7.3e-10 67.4 86 41.9
Gohir.D07G213300 Gossypium hirsutum HOM05D002728 ORTHO05D002874 9.5e-10 67.0 91 44.0
CsaV3_3G046980 Cucumis sativus L. HOM05D002728 ORTHO05D002874 1.2e-09 66.6 87 40.2
HanXRQChr01g0020741 Helianthus annuus HOM05D002728 ORTHO05D002874 1.2e-09 66.6 85 36.5
Sabra06G0213400 Salix brachista HOM05D002728 ORTHO05D002874 1.2e-09 66.6 81 44.4
SalBow6G5526 Salvia bowleyana HOM05D002728 ORTHO05D002874 1.2e-09 66.6 82 40.2
Thecc.09G005900 Theobroma cacao HOM05D002728 ORTHO05D002874 1.6e-09 66.2 87 37.9
FAN27G3346 Fragaria x ananassa HOM05D002728 ORTHO05D002874 2.1e-09 65.9 91 45.1
Aqoxy7G03019 Aquilegia oxysepala HOM05D002728 ORTHO05D002874 2.8e-09 65.5 108 35.2
CARHR076950 Cardamine hirsuta HOM05D002728 ORTHO05D002874 3.6e-09 65.1 85 38.8
MELO3C003638.2 Cucumis melo HOM05D002728 ORTHO05D002874 4.7e-09 64.7 87 39.1
Hund03280 Selenicereus undatus HOM05D002728 ORTHO05D002874 4.7e-09 64.7 89 39.3
FAN15G0233 Fragaria x ananassa HOM05D002728 ORTHO05D002874 8.0e-09 63.9 91 44.0
FvH4_2g36940 Fragaria vesca HOM05D002728 ORTHO05D002874 1.1e-08 63.5 91 44.0
HPP92_022513 Vanilla planifolia HOM05D002728 ORTHO05D002874 1.1e-08 63.5 87 42.5
Peaxi162Scf00211g00232 Petunia axillaris HOM05D002728 ORTHO05D002874 1.4e-08 63.2 85 38.8
QL12p024865 Quercus lobata HOM05D002728 ORTHO05D002874 1.4e-08 63.2 87 36.8
VMungo0647G0359 Vigna mungo HOM05D002728 ORTHO05D002874 1.4e-08 63.2 86 45.3
Glyma.17G202200 Glycine max HOM05D002728 ORTHO05D002874 1.8e-08 62.8 85 42.4
PSO170G5347 Papaver somniferum HOM05D002728 ORTHO05D002874 1.8e-08 62.8 93 37.6
Ciclev10009206m.g Citrus clementina HOM05D002728 ORTHO05D002874 3.1e-08 62.0 85 36.5
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 3.1e-08 62.0 90 34.4
GSVIVG01035537001 Vitis vinifera HOM05D002728 ORTHO05D002874 3.1e-08 62.0 87 39.1
Ca_12874_v3 Cicer arietinum L. HOM05D002728 ORTHO05D002874 4.0e-08 61.6 86 43.0
FAN20G1722 Fragaria x ananassa HOM05D002728 ORTHO05D002874 5.2e-08 61.2 91 44.0
RcHm_v2.0_Chr4g0402271 Rosa chinensis HOM05D002728 ORTHO05D002874 5.2e-08 61.2 85 35.3
EL10Ac2g03729 Beta vulgaris HOM05D002728 ORTHO05D002874 6.8e-08 60.8 89 34.8
PGR147G0008 Punica granatum HOM05D002728 ORTHO05D002874 6.8e-08 60.8 86 34.9
Sc06g0001190 Simmondsia chinensis HOM05D002728 ORTHO05D002874 6.8e-08 60.8 84 40.5
Ciclev10009139m.g Citrus clementina HOM05D002728 ORTHO05D002874 8.9e-08 60.5 87 36.8
Phvul.001G058500 Phaseolus vulgaris HOM05D002728 ORTHO05D002874 8.9e-08 60.5 85 45.9
TPR.G12058 Trifolium pratense HOM05D002728 ORTHO05D002874 8.9e-08 60.5 85 40.0
PSO063G0489 Papaver somniferum HOM05D002728 ORTHO05D002874 2.0e-07 59.3 89 33.7
Glyma.14G133400 Glycine max HOM05D002728 ORTHO05D002874 2.6e-07 58.9 85 41.2
Sed0024156 Sechium edule HOM05D002728 ORTHO05D002874 2.6e-07 58.9 92 38.0
Lalb_Chr24g0402451 Lupinus albus HOM05D002728 ORTHO05D002874 4.4e-07 58.2 85 42.4
RcHm_v2.0_Chr6g0304821 Rosa chinensis HOM05D002728 ORTHO05D002874 4.4e-07 58.2 87 40.2
ECA232G2486 Erigeron canadensis HOM05D000526 ORTHO05D007120 5.8e-07 57.8 87 36.8
arahy.Tifrunner.gnm1.ann1.R81B49 Arachis hypogaea HOM05D002728 ORTHO05D002874 7.5e-07 57.4 87 41.4
Dinv04571 Davidia involucrata HOM05D002728 ORTHO05D002874 7.5e-07 57.4 58 41.4
Potri.006G167600 Populus trichocarpa HOM05D002728 ORTHO05D002874 7.5e-07 57.4 85 34.1
arahy.Tifrunner.gnm1.ann1.CG00YF Arachis hypogaea HOM05D002728 ORTHO05D002874 9.8e-07 57.0 87 41.4
CDE10G0114 Ceratophyllum demersum HOM05D002728 ORTHO05D002874 1.3e-06 56.6 97 39.2
Haze_21713 Corylus avellana HOM05D002728 ORTHO05D002874 1.3e-06 56.6 77 40.3
Medtr1g009890 Medicago truncatula HOM05D002728 ORTHO05D002874 1.3e-06 56.6 85 37.6
AUR62020619 Chenopodium quinoa HOM05D002728 ORTHO05D002874 1.7e-06 56.2 89 37.1
Ah.11g043690 Amaranthus hybridus HOM05D002728 ORTHO05D002874 2.2e-06 55.8 89 37.1
CDE10G0012 Ceratophyllum demersum HOM05D002728 ORTHO05D002874 2.2e-06 55.8 97 39.2
AUR62009043 Chenopodium quinoa HOM05D002728 ORTHO05D002874 2.2e-06 55.8 89 36.0
AUR62038763 Chenopodium quinoa HOM05D002728 ORTHO05D002874 2.2e-06 55.8 89 36.0
ClCG05G017480 Citrullus lanatus HOM05D002728 ORTHO05D002874 2.2e-06 55.8 83 36.1
Lsat_1_v5_gn_1_95140 Lactuca sativa HOM05D002728 ORTHO05D002874 4.9e-06 54.7 89 36.0
MBI14_g17381_MAGBIO Magnolia biondii HOM05D002728 ORTHO05D002874 4.9e-06 54.7 89 33.7
Lj5g0009231 Lotus japonicus HOM05D002728 ORTHO05D002874 6.4e-06 54.3 85 37.6
Lalb_Chr14g0362241 Lupinus albus HOM05D002728 ORTHO05D002874 6.4e-06 54.3 86 38.4
unitig_22.g5140 Utricularia gibba HOM05D002728 ORTHO05D002874 8.3e-06 53.9 27 74.1


User provided reference genes

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