Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g19880 Coffea canephora HOM05D002857 ORTHO05D007919 6.0e-107 391.0 214 100.0
Cc02_g19870 Coffea canephora HOM05D002857 ORTHO05D007919 4.6e-30 135.6 159 50.9
Nitab4.5_0008075g0070 Nicotiana tabacum HOM05D002857 ORTHO05D007919 3.6e-27 125.9 159 47.8
Nitab4.5_0001105g0030 Nicotiana tabacum HOM05D002857 ORTHO05D007919 4.7e-27 125.6 159 47.2
Solyc01g107010.3 Solanum lycopersicum HOM05D002857 ORTHO05D007919 4.7e-27 125.6 159 47.2
Sopen01g049280 Solanum pennellii HOM05D002857 ORTHO05D007919 4.7e-27 125.6 159 47.2
PGSC0003DMG400025743 Solanum tuberosum HOM05D002857 ORTHO05D007919 4.7e-27 125.6 159 47.2
Gohir.D02G204100 Gossypium hirsutum HOM05D002857 ORTHO05D007919 1.1e-26 124.4 165 44.8
Os03g0616300 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D007919 1.1e-26 124.4 111 55.9
Sc14g0002920 Simmondsia chinensis HOM05D002857 ORTHO05D007919 1.1e-26 124.4 165 46.7
Ah.01g006990 Amaranthus hybridus HOM05D002857 ORTHO05D007919 1.4e-26 124.0 169 44.4
MELO3C018521.2 Cucumis melo HOM05D002857 ORTHO05D007919 1.8e-26 123.6 156 47.4
Peaxi162Scf00016g02932 Petunia axillaris HOM05D002857 ORTHO05D007919 1.8e-26 123.6 166 46.4
SGA_v2.0_scaffold225G43045 Striga asiatica HOM05D002857 ORTHO05D007919 3.1e-26 122.9 167 45.5
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 4.0e-26 122.5 165 44.8
ECA236G3688 Erigeron canadensis HOM05D002857 ORTHO05D007919 4.0e-26 122.5 161 46.0
CsaV3_7G007810 Cucumis sativus L. HOM05D002857 ORTHO05D007919 5.2e-26 122.1 156 47.4
MD05G1100500 Malus domestica HOM05D002857 ORTHO05D007919 5.2e-26 122.1 172 43.0
Phvul.002G051600 Phaseolus vulgaris HOM05D002857 ORTHO05D007919 5.2e-26 122.1 156 46.8
VMungo1215G1214 Vigna mungo HOM05D002857 ORTHO05D007919 5.2e-26 122.1 156 46.8
Gorai.005G231400 Gossypium raimondii HOM05D002857 ORTHO05D007919 8.9e-26 121.3 165 43.6
Cpa.g.sc106.47 Carica papaya HOM05D002857 ORTHO05D007919 1.2e-25 120.9 165 43.6
THA.LOC104803441 Tarenaya hassleriana HOM05D002857 ORTHO05D007919 1.2e-25 120.9 162 45.1
Lsat_1_v5_gn_7_85120 Lactuca sativa HOM05D002857 ORTHO05D007919 1.5e-25 120.6 173 44.5
Manes.10G081500 Manihot esculenta HOM05D002857 ORTHO05D007919 1.5e-25 120.6 156 46.8
AUR62030846 Chenopodium quinoa HOM05D002857 ORTHO05D007919 2.6e-25 119.8 168 44.0
A06p03460 Brassica napus HOM05D002857 ORTHO05D007919 3.4e-25 119.4 167 43.1
BraA06t23554Z Brassica rapa HOM05D002857 ORTHO05D007919 3.4e-25 119.4 167 43.1
Migut.B00487 Erythranthe guttata HOM05D002857 ORTHO05D007919 4.4e-25 119.0 168 43.5
Eucgr.G01218 Eucalyptus grandis HOM05D002857 ORTHO05D007919 4.4e-25 119.0 170 42.4
Potri.001G293600 Populus trichocarpa HOM05D002857 ORTHO05D007919 4.4e-25 119.0 156 45.5
Hund00428 Selenicereus undatus HOM05D002857 ORTHO05D007919 4.4e-25 119.0 156 46.2
AL1G57540 Arabidopsis lyrata HOM05D002857 ORTHO05D007919 5.8e-25 118.6 165 43.0
arahy.Tifrunner.gnm1.ann1.TT8B4F Arachis hypogaea HOM05D002857 ORTHO05D007919 5.8e-25 118.6 156 46.2
arahy.Tifrunner.gnm1.ann1.Y568PT Arachis hypogaea HOM05D002857 ORTHO05D007919 5.8e-25 118.6 156 46.2
ClCG02G006830 Citrullus lanatus HOM05D002857 ORTHO05D007919 5.8e-25 118.6 165 43.6
Dinv15808 Davidia involucrata HOM05D002857 ORTHO05D007919 5.8e-25 118.6 156 45.5
EL10Ac9g22200 Beta vulgaris HOM05D002857 ORTHO05D007919 7.5e-25 118.2 156 44.9
CiPaw.05G017900 Carya illinoinensis HOM05D002857 ORTHO05D007919 7.5e-25 118.2 162 44.4
Psat4g227480 Pisum sativum HOM05D002857 ORTHO05D007919 7.5e-25 118.2 155 46.5
QL11p030559 Quercus lobata HOM05D002857 ORTHO05D007919 7.5e-25 118.2 156 44.9
TWI14G1369 Tripterygium wilfordii HOM05D002857 ORTHO05D007919 7.5e-25 118.2 156 46.2
Aa31LG10G4140 Aethionema arabicum HOM05D002857 ORTHO05D007919 9.8e-25 117.9 162 44.4
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 9.8e-25 117.9 167 41.9
C06p04750 Brassica napus HOM05D002857 ORTHO05D007919 9.8e-25 117.9 167 41.9
BolC6t35605H Brassica oleracea HOM05D002857 ORTHO05D007919 9.8e-25 117.9 167 41.9
HanXRQChr16g0509311 Helianthus annuus HOM05D002857 ORTHO05D007919 9.8e-25 117.9 162 43.8
Nn1g04560 Nelumbo nucifera HOM05D002857 ORTHO05D007919 1.3e-24 117.5 156 46.2
Atru.chr5.2347 Acer truncatum HOM05D002857 ORTHO05D007919 1.7e-24 117.1 156 44.9
Sp1g36870 Schrenkiella parvula HOM05D002857 ORTHO05D007919 1.7e-24 117.1 162 43.8
Sed0001102 Sechium edule HOM05D002857 ORTHO05D007919 1.7e-24 117.1 156 46.2
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 2.2e-24 116.7 162 43.8
Ca_24359_v3 Cicer arietinum L. HOM05D002857 ORTHO05D007919 2.2e-24 116.7 155 45.8
Ciclev10027948m.g Citrus clementina HOM05D002857 ORTHO05D007919 2.2e-24 116.7 168 41.7
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 2.2e-24 116.7 158 44.3
Glyma.11G001900 Glycine max HOM05D002857 ORTHO05D007919 2.2e-24 116.7 156 45.5
Lalb_Chr05g0210781 Lupinus albus HOM05D002857 ORTHO05D007919 2.2e-24 116.7 157 44.6
Carub.0001s3917 Capsella rubella HOM05D002857 ORTHO05D007919 2.9e-24 116.3 165 42.4
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 2.9e-24 116.3 168 41.7
TPR.G8313 Trifolium pratense HOM05D002857 ORTHO05D007919 2.9e-24 116.3 160 44.4
CARHR040030 Cardamine hirsuta HOM05D002857 ORTHO05D007919 3.7e-24 115.9 165 42.4
Lj1g0007638 Lotus japonicus HOM05D002857 ORTHO05D007919 4.9e-24 115.5 168 42.3
GSVIVG01037836001 Vitis vinifera HOM05D002857 ORTHO05D007919 4.9e-24 115.5 167 43.7
Lj5A219G36 Lonicera japonica HOM05D002857 ORTHO05D007919 6.4e-24 115.2 162 43.2
AT1G49980 Arabidopsis thaliana HOM05D002857 ORTHO05D007919 8.3e-24 114.8 165 41.2
DCAR_021953 Daucus carota HOM05D002857 ORTHO05D007919 8.3e-24 114.8 163 42.9
Prupe.8G144900 Prunus persica HOM05D002857 ORTHO05D007919 8.3e-24 114.8 163 42.9
Thhalv10011295m.g Eutrema salsugineum HOM05D002857 ORTHO05D007919 1.4e-23 114.0 167 42.5
FAN27G0944 Fragaria x ananassa HOM05D002857 ORTHO05D007919 1.4e-23 114.0 168 39.9
PSO675G1022 Papaver somniferum HOM05D002857 ORTHO05D007919 1.4e-23 114.0 156 43.6
Medtr5g005030 Medicago truncatula HOM05D002857 ORTHO05D007919 1.9e-23 113.6 152 46.1
FvH4_2g04350 Fragaria vesca HOM05D002857 ORTHO05D007919 3.2e-23 112.8 164 42.1
Oeu013792.1 Olea europaea HOM05D002857 ORTHO05D007919 3.2e-23 112.8 188 39.9
PGR042G1700 Punica granatum HOM05D002857 ORTHO05D007919 3.2e-23 112.8 156 42.9
RcHm_v2.0_Chr6g0253811 Rosa chinensis HOM05D002857 ORTHO05D007919 4.1e-23 112.5 164 40.9
Cfa004626 Carpinus fangiana HOM05D002857 ORTHO05D007919 7.1e-23 111.7 172 42.4
ATR1153G103 Amborella trichopoda HOM05D002857 ORTHO05D007919 9.2e-23 111.3 153 45.1
Aqoxy6G02627 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 1.6e-22 110.5 156 42.9
CDE04G2933 Ceratophyllum demersum HOM05D002857 ORTHO05D007919 3.5e-22 109.4 163 41.7
HPP92_015730 Vanilla planifolia HOM05D002857 ORTHO05D007919 6.0e-22 108.6 156 41.7
FAN24G3289 Fragaria x ananassa HOM05D002857 ORTHO05D007919 7.8e-22 108.2 158 42.4
SEGI_11563 Sequoiadendron giganteum HOM05D002857 ORTHO05D007919 1.3e-21 107.5 161 41.6
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 1.3e-21 107.5 163 42.3
Gohir.A03G182500 Gossypium hirsutum HOM05D002857 ORTHO05D007919 6.6e-21 105.1 83 63.9
AUR62027007 Chenopodium quinoa HOM05D002857 ORTHO05D007919 8.6e-21 104.8 162 42.0
TAR381G0324 Trochodendron aralioides HOM05D002857 ORTHO05D007919 8.6e-21 104.8 149 43.6
Glyma.01G242400 Glycine max HOM05D002857 ORTHO05D007919 1.1e-20 104.4 104 54.8
SpUN0137_0010 Schrenkiella parvula HOM05D002857 ORTHO05D007919 2.5e-20 103.2 100 55.0
Thecc.02G117100 Theobroma cacao HOM05D002857 ORTHO05D007919 3.3e-20 102.8 80 65.0
Haze_10221 Corylus avellana HOM05D002857 ORTHO05D007919 1.2e-19 100.9 77 64.9
vmacro19533 Vaccinium macrocarpon HOM05D002857 ORTHO05D007919 3.6e-19 99.4 80 61.2
PSO541G1205 Papaver somniferum HOM05D002857 ORTHO05D007919 6.2e-19 98.6 80 61.2
AUR62036501 Chenopodium quinoa HOM05D002857 ORTHO05D007919 6.8e-18 95.1 91 56.0
SMO364G0103 Selaginella moellendorffii HOM05D002857 ORTHO05D007919 2.0e-17 93.6 174 37.9
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 7.6e-17 91.7 80 57.5
CBR_g41215 Chara braunii HOM05D002857 ORTHO05D007919 7.6e-17 91.7 77 58.4
CDE06G0830 Ceratophyllum demersum HOM05D002857 ORTHO05D007919 2.9e-16 89.7 103 49.5
FAN20G2596 Fragaria x ananassa HOM05D002857 ORTHO05D007919 7.8e-14 81.6 164 32.9
MCO07G531 Micromonas commoda HOM05D002857 ORTHO05D007919 1.0e-13 81.3 74 58.1
Cre02.g079850 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D007919 1.9e-12 77.0 151 34.4
SHI27438 Sapria himalayana HOM05D002857 ORTHO05D007919 5.6e-12 75.5 59 64.4
FAN15G1619 Fragaria x ananassa HOM05D000062 ORTHO05D007919 1.1e-10 71.2 74 51.4
Sc14g0002950 Simmondsia chinensis HOM05D002857 ORTHO05D007919 3.1e-10 69.7 53 64.2
PRCOL_00006042 Prasinoderma coloniale HOM05D002857 ORTHO05D007919 2.1e-06 57.0 82 37.8


User provided reference genes

Program Settings