Gene: AT1G49980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G49980
  • Transcript Identifier AT1G49980.3
  • Gene Type Coding gene
  • Location Chr1 : 18508026-18511833 : positive

Gene Family Information

  • ID HOM05D002857
  • #Genes/#Species 242/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G49980.3
  • uniprot Q6JDV7

Descriptions

  • Description DNA/RNA polymerases superfamily protein
  • Computational description DNA/RNA polymerases superfamily protein; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 10430 Blast hits to 10220 proteins in 2419 species: Archae - 210; Bacteria - 6752; Metazoa - 626; Fungi - 433; Plants - 141; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042276
IBA
Gene Ontologyerror-prone translesion synthesis1
GO:0006281
IDA
IEA
Gene OntologyDNA repair2
GO:0006281
IEA
InterProDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006260
IEA
GOA DatabaseDNA replication

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003887
IDA, IMP
IBA
IEA
Gene OntologyDNA-directed DNA polymerase activity1 2
GO:0003887
IEA
InterProDNA-directed DNA polymerase activity
GO:0003684
IEA
Gene Ontologydamaged DNA binding
GO:0003684
IEA
InterProdamaged DNA binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003697
IDA
Gene Ontologysingle-stranded DNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IBA
Gene Ontologynucleus1
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017961 DNA polymerase, Y-family, little finger domain
IPR043502 DNA/RNA polymerase superfamily
IPR041298 DNA polymerase eta, ubiquitin-binding zinc finger
IPR036775 DNA polymerase, Y-family, little finger domain superfamily
IPR022880 DNA polymerase IV
IPR001126 UmuC domain
IPR043128 Reverse transcriptase/Diguanylate cyclase domain
Mapman id Description
14.2.3 DNA damage response.DNA repair polymerase activities.DNA polymerase kappa (POLK)