Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.1e-261 905.2 463 100.0
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.0e-199 700.3 463 78.4
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.0e-199 700.3 463 78.6
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.5e-198 696.4 465 77.6
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 3.3e-195 685.3 466 76.6
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.4e-195 684.9 466 76.6
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 7.0e-193 677.6 463 76.5
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 9.1e-193 677.2 466 76.0
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 6.5e-191 671.0 462 75.8
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.1e-190 670.2 466 77.0
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 3.2e-190 668.7 472 75.0
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.2e-190 668.3 466 75.1
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 6.1e-189 664.5 464 76.9
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.0e-188 663.7 501 71.3
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 3.0e-188 662.1 462 75.1
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 3.0e-188 662.1 463 76.0
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.0e-188 661.8 465 76.1
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 8.8e-188 660.6 463 74.1
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.2e-187 660.2 468 75.9
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 3.4e-187 658.7 468 75.6
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 7.5e-187 657.5 464 75.9
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.7e-186 656.4 464 76.5
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 2.2e-186 656.0 435 77.9
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.8e-186 655.6 459 76.5
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 4.8e-186 654.8 463 74.7
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 8.3e-186 654.1 453 75.3
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 9.1e-185 650.6 464 75.0
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 3.5e-184 648.7 465 74.6
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 3.8e-183 645.2 464 74.6
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 8.5e-183 644.0 461 73.1
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.9e-182 642.9 464 74.8
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 5.5e-182 641.3 472 73.5
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.7e-181 639.0 464 73.7
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 3.6e-181 638.6 465 70.8
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 6.8e-180 634.4 463 72.4
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 9.8e-179 630.6 425 77.2
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 3.1e-177 625.5 470 72.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 2.7e-176 622.5 419 77.3
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 5.9e-176 621.3 464 71.3
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 9.5e-174 614.0 465 71.8
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.0e-172 610.5 466 72.1
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 4.0e-172 608.6 466 68.5
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 5.2e-172 608.2 466 70.8
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 8.9e-172 607.4 463 70.4
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.0e-171 606.3 463 69.3
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 2.6e-171 605.9 462 71.4
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 3.4e-171 605.5 463 71.7
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 3.4e-171 605.5 464 72.0
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 9.8e-171 604.0 464 69.2
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 3.7e-170 602.1 463 70.2
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.1e-169 600.5 465 68.6
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.4e-169 600.1 461 68.5
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.8e-169 599.7 442 73.3
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 2.4e-169 599.4 463 70.0
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 2.4e-169 599.4 464 71.1
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.2e-168 597.0 464 69.6
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 2.0e-168 596.3 463 69.5
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 2.7e-168 595.9 466 68.5
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.7e-167 593.2 463 69.1
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 2.3e-167 592.8 461 70.1
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 5.0e-167 591.7 465 69.5
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 8.6e-167 590.9 463 68.3
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 8.6e-167 590.9 460 67.6
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.1e-166 590.5 463 68.9
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.5e-166 590.1 409 73.1
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.6e-165 586.6 463 68.5
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 4.0e-164 582.0 468 67.5
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 5.2e-164 581.6 464 67.9
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 6.8e-164 581.3 465 66.9
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 8.9e-164 580.9 463 67.4
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.2e-163 580.5 476 67.2
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.0e-163 579.7 481 66.5
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 2.0e-163 579.7 464 66.6
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 9.8e-163 577.4 466 67.8
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.7e-162 576.6 464 67.7
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 1.7e-162 576.6 477 67.1
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.2e-162 576.2 473 66.8
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 2.9e-162 575.9 463 68.0
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 6.4e-162 574.7 463 68.0
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 6.4e-162 574.7 468 69.0
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-160 570.5 466 67.8
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.2e-160 570.5 461 67.2
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 3.5e-160 568.9 462 68.4
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 3.5e-160 568.9 463 68.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 4.6e-160 568.5 463 67.8
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 6.0e-160 568.2 404 73.5
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 7.8e-160 567.8 463 67.8
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.0e-159 567.4 462 68.2
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.7e-159 566.6 463 66.7
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.7e-159 566.6 463 67.0
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.9e-159 565.5 463 67.8
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 3.9e-159 565.5 463 67.6
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 8.6e-159 564.3 463 67.4
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.1e-158 563.9 463 67.4
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.5e-158 563.5 463 65.0
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.9e-158 563.1 463 67.2
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 7.3e-158 561.2 515 62.5
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 9.5e-158 560.8 463 65.9
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 8.1e-157 557.8 371 77.6
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.2e-155 553.9 467 66.6
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.5e-155 553.5 463 66.1
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 3.4e-155 552.4 467 66.4
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 4.4e-155 552.0 466 66.1
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 4.4e-155 552.0 463 65.7
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 5.8e-155 551.6 493 63.5
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.3e-154 550.4 468 65.2
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 3.2e-153 545.8 464 63.6
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 4.1e-153 545.4 470 64.9
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 5.4e-153 545.0 469 65.2
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 5.4e-153 545.0 461 65.1
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 2.1e-152 543.1 463 65.0
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 8.6e-151 537.7 492 62.6
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 2.4e-140 503.1 427 66.0
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 4.9e-138 495.4 406 67.5
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.9e-137 493.4 428 64.3
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 5.4e-137 491.9 438 63.0
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 2.1e-136 490.0 392 66.6
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 2.7e-136 489.6 407 65.8
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 6.2e-133 478.4 478 55.6
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 1.1e-129 467.6 479 56.4
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.8e-125 453.0 520 52.5
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 3.5e-120 436.0 464 56.9
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 4.6e-120 435.6 439 58.3
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 8.7e-119 431.4 511 48.5
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 4.3e-118 429.1 353 66.3
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.3e-117 427.6 497 50.5
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.3e-111 407.5 352 61.4
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 8.7e-111 404.8 501 47.7
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 6.3e-109 398.7 463 51.0
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 9.0e-100 368.2 470 51.3
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.1e-92 344.7 401 50.6
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 5.3e-92 342.4 497 44.5
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.9e-90 336.7 249 67.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 3.9e-87 326.2 351 56.7
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 1.1e-81 308.1 549 39.5
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 7.5e-78 295.4 375 49.1
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 3.2e-73 280.0 529 36.9
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.7e-72 276.2 371 44.7
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 5.7e-62 242.7 254 59.1
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.3e-58 231.5 383 39.7
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 7.3e-57 225.7 139 79.9
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 2.1e-56 224.2 183 66.1
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 7.0e-52 209.1 188 62.2
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 9.2e-52 208.8 188 61.2
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 6.6e-50 202.6 259 50.6
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 1.5e-49 201.4 182 60.4
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.0e-46 191.0 363 37.2
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.9e-44 184.5 231 48.1
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.7e-42 177.9 253 42.3
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 4.9e-37 159.8 134 70.1
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 4.1e-36 156.8 359 33.7
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 7.8e-35 152.5 141 57.4
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 8.1e-32 142.5 109 63.3
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.3e-26 125.2 83 79.5
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.1e-24 117.9 188 45.2
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 3.6e-24 117.1 63 84.1
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 8.1e-24 115.9 140 52.1
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.8e-23 114.8 153 51.0
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.5e-22 111.7 128 50.8
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 5.8e-22 109.8 170 43.5
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 3.9e-18 97.1 273 26.0
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 7.3e-17 92.8 229 32.8
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 3.6e-16 90.5 99 49.5
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.1e-11 74.7 211 33.6
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 2.7e-11 74.3 121 46.3
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 6.0e-11 73.2 65 61.5
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.3e-08 65.5 109 35.8
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.3e-08 65.5 43 76.7
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 1.8e-07 61.6 42 76.2
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.4e-07 61.2 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 2.4e-07 61.2 40 77.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.1e-07 60.8 42 69.0


User provided reference genes

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