Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 2.6e-225 785.0 393 100.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 9.5e-74 281.6 305 50.5
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 7.0e-69 265.4 300 51.0
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 7.3e-66 255.4 311 46.3
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 9.5e-66 255.0 278 49.6
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.6e-65 254.2 277 49.5
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.3e-62 244.6 304 46.1
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.0e-59 233.4 292 42.8
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.4e-56 224.6 289 44.3
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 6.8e-56 222.2 278 45.3
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 5.8e-55 219.2 303 42.9
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 5.8e-55 219.2 298 42.3
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 1.3e-54 218.0 350 38.9
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 6.4e-54 215.7 303 41.6
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 4.1e-53 213.0 320 40.3
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.1e-50 204.9 268 45.1
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 7.3e-50 202.2 216 52.3
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.0e-48 196.4 318 39.0
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 6.4e-46 189.1 184 53.3
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 6.0e-44 182.6 209 50.2
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 3.9e-43 179.9 331 35.6
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 4.3e-42 176.4 283 36.7
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 2.8e-41 173.7 264 39.4
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 3.1e-40 170.2 262 38.9
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 4.0e-40 169.9 307 33.2
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.1e-37 159.8 289 36.3
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 6.0e-36 156.0 259 37.1
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.3e-35 154.8 325 32.3
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.2e-33 148.3 287 33.1
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.1e-33 145.6 284 35.2
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.4e-32 144.8 308 33.1
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 5.2e-32 142.9 296 31.4
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 6.9e-32 142.5 161 47.2
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 6.9e-32 142.5 303 33.0
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 4.4e-31 139.8 290 34.5
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 7.6e-31 139.0 312 32.4
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 4.9e-30 136.3 314 30.3
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.4e-30 135.6 315 31.1
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.4e-29 134.8 315 31.4
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 2.4e-29 134.0 193 44.0
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 7.1e-29 132.5 280 35.0
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.2e-28 131.7 294 31.3
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.2e-28 131.7 337 30.9
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.2e-28 131.7 337 30.6
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.6e-28 131.3 309 32.0
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.7e-28 130.6 279 31.9
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.5e-28 130.2 320 30.9
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 2.3e-27 127.5 289 30.8
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.9e-26 124.4 317 30.3
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 2.5e-26 124.0 293 32.4
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 3.3e-26 123.6 292 31.8
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 7.3e-26 122.5 319 29.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.3e-25 121.7 277 32.1
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.6e-25 121.3 291 30.2
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.2e-25 119.4 316 28.8
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.1e-25 119.0 341 28.4
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.9e-24 115.9 341 28.4
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 4.5e-23 113.2 273 31.9
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 7.6e-23 112.5 311 28.3
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 3.8e-22 110.2 271 27.7
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 4.9e-22 109.8 261 27.6
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.1e-21 108.6 309 30.1
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 4.2e-21 106.7 264 28.4
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.2e-20 105.1 128 45.3
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.6e-20 104.8 356 28.4
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 7.9e-20 102.4 291 27.1
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 1.3e-19 101.7 114 48.2
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 1.8e-19 101.3 261 26.4
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 3.9e-19 100.1 267 28.5
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 3.9e-19 100.1 265 27.2
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 5.1e-19 99.8 263 27.8
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 6.7e-19 99.4 264 27.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.7e-19 99.0 348 26.1
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 8.7e-19 99.0 281 29.5
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 2.5e-18 97.4 263 27.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 3.3e-18 97.1 263 27.0
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 9.6e-18 95.5 261 27.2
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.6e-17 94.7 261 25.3
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.6e-17 94.7 261 25.3
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 2.8e-17 94.0 264 26.9
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 6.2e-17 92.8 261 26.4
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 8.1e-17 92.4 174 33.9
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.1e-16 92.0 261 26.8
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.8e-16 91.3 261 26.1
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.4e-16 90.9 261 26.1
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 4.0e-16 90.1 216 30.6
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 4.0e-16 90.1 193 31.6
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 2.6e-15 87.4 305 28.2
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 5.8e-15 86.3 99 47.5
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 3.8e-14 83.6 157 34.4
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 2.4e-13 80.9 201 28.4
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 9.3e-13 79.0 301 26.2
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.1e-12 77.8 216 28.7
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 2.1e-12 77.8 223 27.8
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 2.3e-11 74.3 174 29.9
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 6.7e-11 72.8 215 27.0
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 6.7e-11 72.8 143 35.0
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 8.7e-11 72.4 159 30.2
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 8.7e-11 72.4 169 32.5
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.3e-10 70.5 202 29.2
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 3.3e-10 70.5 143 32.9
Cc06_g20310 Coffea canephora HOM05D006496 ORTHO05D008390 7.4e-10 69.3 45 82.2
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 2.1e-09 67.8 158 31.0
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.1e-09 67.8 207 25.6
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.8e-09 67.4 137 31.4
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.8e-09 66.6 154 31.2
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 6.2e-09 66.2 234 23.9
Medtr6g054960 Medicago truncatula HOM05D003520 ORTHO05D003332 8.2e-09 65.9 262 26.3
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 8.2e-09 65.9 150 32.7
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.1e-08 65.5 137 30.7
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.4e-08 65.1 68 47.1
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.8e-08 64.7 144 34.0
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.4e-08 64.3 175 29.1
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 2.4e-08 64.3 165 27.3
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 4.0e-08 63.5 138 31.2
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 4.0e-08 63.5 168 30.4
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 4.0e-08 63.5 137 29.9
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 5.3e-08 63.2 295 25.4
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.9e-08 62.8 137 31.4
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.9e-08 62.8 137 32.8
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.9e-08 62.8 137 32.8
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 6.9e-08 62.8 68 45.6
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.2e-07 62.0 95 33.7
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.2e-07 62.0 50 54.0
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 1.5e-07 61.6 87 42.5
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.4e-07 60.5 166 28.3
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 4.5e-07 60.1 206 28.2
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.5e-07 60.1 49 55.1
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 5.8e-07 59.7 47 51.1
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.8e-07 59.7 171 29.8
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.8e-07 59.7 137 32.1
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 5.8e-07 59.7 174 27.6
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 7.6e-07 59.3 153 30.7
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 7.6e-07 59.3 176 28.4
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 7.6e-07 59.3 135 29.6
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 1.0e-06 58.9 171 29.2
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.0e-06 58.9 65 44.6
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.3e-06 58.5 143 28.7
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 1.3e-06 58.5 45 60.0
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 1.3e-06 58.5 45 60.0
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 1.3e-06 58.5 45 60.0
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.3e-06 58.5 153 28.8
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 1.7e-06 58.2 141 30.5
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 2.9e-06 57.4 154 29.2
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.9e-06 57.4 74 40.5
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 3.8e-06 57.0 162 27.8
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 4.9e-06 56.6 52 51.9
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 6.5e-06 56.2 60 48.3
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 6.5e-06 56.2 140 30.0


User provided reference genes

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